miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7180 3' -56 NC_001900.1 + 35668 1.09 0.000757
Target:  5'- aGAUGUCCGAAGACACCCUGGCGUCCAg -3'
miRNA:   3'- -CUACAGGCUUCUGUGGGACCGCAGGU- -5'
7180 3' -56 NC_001900.1 + 10389 0.76 0.175311
Target:  5'- aGAUGUaCCG-AGGCugCCUGGCGaUCCc -3'
miRNA:   3'- -CUACA-GGCuUCUGugGGACCGC-AGGu -5'
7180 3' -56 NC_001900.1 + 25809 0.69 0.444105
Target:  5'- cGAUG-CCGguGugGUCCUGuGCGUCCAg -3'
miRNA:   3'- -CUACaGGCuuCugUGGGAC-CGCAGGU- -5'
7180 3' -56 NC_001900.1 + 17501 0.68 0.49468
Target:  5'- --gGUCCG-GGACAUCCgggaGGCGUaCCGg -3'
miRNA:   3'- cuaCAGGCuUCUGUGGGa---CCGCA-GGU- -5'
7180 3' -56 NC_001900.1 + 5631 0.67 0.547717
Target:  5'- aGUGaUCCG-AGACAagaUCCUGGCGaUCCu -3'
miRNA:   3'- cUAC-AGGCuUCUGU---GGGACCGC-AGGu -5'
7180 3' -56 NC_001900.1 + 9995 0.67 0.580397
Target:  5'- -cUGUUCGAcGcguaccucgcccGCAUCCUGGCGUUCGa -3'
miRNA:   3'- cuACAGGCUuC------------UGUGGGACCGCAGGU- -5'
7180 3' -56 NC_001900.1 + 24321 0.67 0.591388
Target:  5'- -cUGUCCGAAGAUguaaccagGCCCU-GCGguaCCAc -3'
miRNA:   3'- cuACAGGCUUCUG--------UGGGAcCGCa--GGU- -5'
7180 3' -56 NC_001900.1 + 31745 0.66 0.613465
Target:  5'- aGAUGUCCGA--ACGCgUUGGC-UCCu -3'
miRNA:   3'- -CUACAGGCUucUGUGgGACCGcAGGu -5'
7180 3' -56 NC_001900.1 + 37050 0.66 0.635609
Target:  5'- uGAUG-CCGAGaACGCCCuucaUGGCGUUgAg -3'
miRNA:   3'- -CUACaGGCUUcUGUGGG----ACCGCAGgU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.