miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7180 5' -57.7 NC_001900.1 + 23829 0.66 0.549351
Target:  5'- -aUCGGCGCUGGcuUCcgGCGCUgGGg -3'
miRNA:   3'- uaGGCUGCGGCCu-AGuaCGCGAgCUg -5'
7180 5' -57.7 NC_001900.1 + 40256 0.66 0.548279
Target:  5'- cGUCCaACGUcuugagggucacgCGGGUCAUGUcCUCGACc -3'
miRNA:   3'- -UAGGcUGCG-------------GCCUAGUACGcGAGCUG- -5'
7180 5' -57.7 NC_001900.1 + 18654 0.66 0.528045
Target:  5'- -aCCGGCGCgGGuUCc--UGCUCGACg -3'
miRNA:   3'- uaGGCUGCGgCCuAGuacGCGAGCUG- -5'
7180 5' -57.7 NC_001900.1 + 17828 0.66 0.507053
Target:  5'- cUCCGAaaCGCUGG-UCAccuCGCUCGGCc -3'
miRNA:   3'- uAGGCU--GCGGCCuAGUac-GCGAGCUG- -5'
7180 5' -57.7 NC_001900.1 + 18551 0.67 0.49669
Target:  5'- uUCaCGGC-CCGGAUCugcaGUGCGCU-GGCa -3'
miRNA:   3'- uAG-GCUGcGGCCUAG----UACGCGAgCUG- -5'
7180 5' -57.7 NC_001900.1 + 38293 0.67 0.49669
Target:  5'- cAUCCu-CGCCuucuggcauggGGAugauUCGUGCGUUCGGCa -3'
miRNA:   3'- -UAGGcuGCGG-----------CCU----AGUACGCGAGCUG- -5'
7180 5' -57.7 NC_001900.1 + 336 0.67 0.49669
Target:  5'- gAUCCGGCaaccGCCGGAUCuaGCGC-CG-Cg -3'
miRNA:   3'- -UAGGCUG----CGGCCUAGuaCGCGaGCuG- -5'
7180 5' -57.7 NC_001900.1 + 5705 0.67 0.486424
Target:  5'- gGUCaCG-CGCCGGAUCAacgGCGggcucaccaacCUCGAUg -3'
miRNA:   3'- -UAG-GCuGCGGCCUAGUa--CGC-----------GAGCUG- -5'
7180 5' -57.7 NC_001900.1 + 16969 0.67 0.47626
Target:  5'- cGUUCGGCGCUGGAgCcgGUGUggucgcacUCGGCa -3'
miRNA:   3'- -UAGGCUGCGGCCUaGuaCGCG--------AGCUG- -5'
7180 5' -57.7 NC_001900.1 + 13372 0.67 0.466202
Target:  5'- gAUCCGGCGUCGGAUCccaGauCUgGACg -3'
miRNA:   3'- -UAGGCUGCGGCCUAGua-CgcGAgCUG- -5'
7180 5' -57.7 NC_001900.1 + 27122 0.67 0.456256
Target:  5'- aAUCCGccagguACGCCGGAUgCGUGauCGCccCGACg -3'
miRNA:   3'- -UAGGC------UGCGGCCUA-GUAC--GCGa-GCUG- -5'
7180 5' -57.7 NC_001900.1 + 7390 0.68 0.426171
Target:  5'- gAUCCcGCGCCGGAUCGUGUuCUucaacgggaucacCGAUa -3'
miRNA:   3'- -UAGGcUGCGGCCUAGUACGcGA-------------GCUG- -5'
7180 5' -57.7 NC_001900.1 + 15128 0.68 0.417659
Target:  5'- cAUCCGGCGCaucCGGuUCucgGUGCUgGACa -3'
miRNA:   3'- -UAGGCUGCG---GCCuAGua-CGCGAgCUG- -5'
7180 5' -57.7 NC_001900.1 + 28835 0.68 0.390052
Target:  5'- -cCCGAaccaGaCCGGAgcCAUGUGCUCGAa -3'
miRNA:   3'- uaGGCUg---C-GGCCUa-GUACGCGAGCUg -5'
7180 5' -57.7 NC_001900.1 + 35900 0.68 0.390052
Target:  5'- -aCCGccaGCCGcGAUCAgGCGCUgGGCg -3'
miRNA:   3'- uaGGCug-CGGC-CUAGUaCGCGAgCUG- -5'
7180 5' -57.7 NC_001900.1 + 42745 0.69 0.381118
Target:  5'- -gCCGugGCCGGugcggC-UGCGC-CGACc -3'
miRNA:   3'- uaGGCugCGGCCua---GuACGCGaGCUG- -5'
7180 5' -57.7 NC_001900.1 + 4173 0.7 0.3361
Target:  5'- -cCCGAugugcccauCGCUGGAugagauccgagaggUCGUGgGCUCGACg -3'
miRNA:   3'- uaGGCU---------GCGGCCU--------------AGUACgCGAGCUG- -5'
7180 5' -57.7 NC_001900.1 + 21586 0.7 0.307045
Target:  5'- -gCCGACgGCCGGcUCAaggccgUGCGgCUCGGCc -3'
miRNA:   3'- uaGGCUG-CGGCCuAGU------ACGC-GAGCUG- -5'
7180 5' -57.7 NC_001900.1 + 35702 1.06 0.000716
Target:  5'- gAUCCGACGCCGGAUCAUGCGCUCGACc -3'
miRNA:   3'- -UAGGCUGCGGCCUAGUACGCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.