miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7181 3' -57.1 NC_001900.1 + 5559 0.66 0.586224
Target:  5'- --aGCgAG-CGaUGGACGCGG-AGCAGg -3'
miRNA:   3'- acgCGgUCaGC-ACCUGCGUCaUCGUC- -5'
7181 3' -57.1 NC_001900.1 + 33651 0.66 0.585127
Target:  5'- cGCGacggacaCCGGccUUGUGGGCGUGGUGGCc- -3'
miRNA:   3'- aCGC-------GGUC--AGCACCUGCGUCAUCGuc -5'
7181 3' -57.1 NC_001900.1 + 40910 0.66 0.553528
Target:  5'- gGUGCCGGgauGUGGGCGUu---GCAGa -3'
miRNA:   3'- aCGCGGUCag-CACCUGCGucauCGUC- -5'
7181 3' -57.1 NC_001900.1 + 47378 0.66 0.532031
Target:  5'- uUGcCGCCuuuGGUgaCGUGGACGUAGUuGguGa -3'
miRNA:   3'- -AC-GCGG---UCA--GCACCUGCGUCAuCguC- -5'
7181 3' -57.1 NC_001900.1 + 8710 0.67 0.479749
Target:  5'- aGUGCCccgcgAGuUCGUGGACGCu---GCAGu -3'
miRNA:   3'- aCGCGG-----UC-AGCACCUGCGucauCGUC- -5'
7181 3' -57.1 NC_001900.1 + 14352 0.68 0.439796
Target:  5'- cGCG-CAGUgUGUGGugGCAGgcGguGu -3'
miRNA:   3'- aCGCgGUCA-GCACCugCGUCauCguC- -5'
7181 3' -57.1 NC_001900.1 + 3566 0.68 0.430106
Target:  5'- aGCGCCuguuGUCGUGGuggaagaugcuGCGCGacaacgauGUGGUAGu -3'
miRNA:   3'- aCGCGGu---CAGCACC-----------UGCGU--------CAUCGUC- -5'
7181 3' -57.1 NC_001900.1 + 44677 0.68 0.429144
Target:  5'- gGCGaCAG-CGUGGaACGCGGUccccugcGGCAGc -3'
miRNA:   3'- aCGCgGUCaGCACC-UGCGUCA-------UCGUC- -5'
7181 3' -57.1 NC_001900.1 + 34917 0.69 0.401808
Target:  5'- cGCGCCAGUgCGgGGAUGagucguacuCGGUGGCGu -3'
miRNA:   3'- aCGCGGUCA-GCaCCUGC---------GUCAUCGUc -5'
7181 3' -57.1 NC_001900.1 + 15670 0.7 0.339753
Target:  5'- cGCGCCGGUCGacaccgcuccugcUGaagaaGCGCAGcAGCAGa -3'
miRNA:   3'- aCGCGGUCAGC-------------ACc----UGCGUCaUCGUC- -5'
7181 3' -57.1 NC_001900.1 + 40085 0.71 0.28639
Target:  5'- -aCGCCAG-CGUGG-CGUAGUGGCc- -3'
miRNA:   3'- acGCGGUCaGCACCuGCGUCAUCGuc -5'
7181 3' -57.1 NC_001900.1 + 41990 0.72 0.265334
Target:  5'- -aUGUCAccGUCGUGGGCGUAGUcGCGGa -3'
miRNA:   3'- acGCGGU--CAGCACCUGCGUCAuCGUC- -5'
7181 3' -57.1 NC_001900.1 + 34527 0.73 0.215309
Target:  5'- gUGUGCCu-UCGUGGAgCGCGGguugAGCGGg -3'
miRNA:   3'- -ACGCGGucAGCACCU-GCGUCa---UCGUC- -5'
7181 3' -57.1 NC_001900.1 + 46354 0.76 0.135406
Target:  5'- cGCGCCAGUCGUcgcgaagccucuGGcCGCuggcguuGUAGCAGg -3'
miRNA:   3'- aCGCGGUCAGCA------------CCuGCGu------CAUCGUC- -5'
7181 3' -57.1 NC_001900.1 + 35308 1.09 0.000498
Target:  5'- aUGCGCCAGUCGUGGACGCAGUAGCAGa -3'
miRNA:   3'- -ACGCGGUCAGCACCUGCGUCAUCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.