miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7181 5' -56 NC_001900.1 + 45903 0.67 0.596739
Target:  5'- gGUCCGCUcaagacuUCGaUGGcCGCGaggaucUCGCGGu -3'
miRNA:   3'- -UAGGCGA-------AGC-ACCaGCGUgu----AGCGCC- -5'
7181 5' -56 NC_001900.1 + 37236 0.67 0.608807
Target:  5'- -gCCgGCggUCGUGGUUGC-CuUCGUGGa -3'
miRNA:   3'- uaGG-CGa-AGCACCAGCGuGuAGCGCC- -5'
7181 5' -56 NC_001900.1 + 29494 0.66 0.619799
Target:  5'- aAUCCgGCUUCGUGGagGCGaAUCaGCGc -3'
miRNA:   3'- -UAGG-CGAAGCACCagCGUgUAG-CGCc -5'
7181 5' -56 NC_001900.1 + 7827 0.66 0.652801
Target:  5'- -cCCGCagCGUGGaUCaC-CGUCGCGGc -3'
miRNA:   3'- uaGGCGaaGCACC-AGcGuGUAGCGCC- -5'
7181 5' -56 NC_001900.1 + 43382 0.67 0.586892
Target:  5'- -aCCGUUUCGaGGUCGCgGCgGUCGCu- -3'
miRNA:   3'- uaGGCGAAGCaCCAGCG-UG-UAGCGcc -5'
7181 5' -56 NC_001900.1 + 18916 0.68 0.553247
Target:  5'- gGUCCaggaggccaagaaGCUcgggaaGUGG-CGCACGUCGUGGg -3'
miRNA:   3'- -UAGG-------------CGAag----CACCaGCGUGUAGCGCC- -5'
7181 5' -56 NC_001900.1 + 25144 0.68 0.532908
Target:  5'- -aCCGCUggggUCGUuGUCGUugAUCGUGa -3'
miRNA:   3'- uaGGCGA----AGCAcCAGCGugUAGCGCc -5'
7181 5' -56 NC_001900.1 + 35342 1.08 0.000964
Target:  5'- gAUCCGCUUCGUGGUCGCACAUCGCGGc -3'
miRNA:   3'- -UAGGCGAAGCACCAGCGUGUAGCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.