miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7182 3' -58.3 NC_001900.1 + 20336 0.66 0.582024
Target:  5'- uGUCGUgGUGACaGAC-CgGGCCg-- -3'
miRNA:   3'- gCAGCAgCGCUGcCUGuGgCCGGaac -5'
7182 3' -58.3 NC_001900.1 + 11377 0.66 0.560854
Target:  5'- uGUCGagggcgaaccUCGCcaGugGGACACCuuGGCCg-- -3'
miRNA:   3'- gCAGC----------AGCG--CugCCUGUGG--CCGGaac -5'
7182 3' -58.3 NC_001900.1 + 23800 0.66 0.539901
Target:  5'- uGUgGUcCGaCGACGGGCuCCGGUCg-- -3'
miRNA:   3'- gCAgCA-GC-GCUGCCUGuGGCCGGaac -5'
7182 3' -58.3 NC_001900.1 + 17843 0.67 0.508995
Target:  5'- -uUCGUCGCuGACGG-CA-CGGCCa-- -3'
miRNA:   3'- gcAGCAGCG-CUGCCuGUgGCCGGaac -5'
7182 3' -58.3 NC_001900.1 + 43388 0.67 0.498856
Target:  5'- uCGagGUCGCGGCGGuCGCUGaguGCgUUGa -3'
miRNA:   3'- -GCagCAGCGCUGCCuGUGGC---CGgAAC- -5'
7182 3' -58.3 NC_001900.1 + 40632 0.67 0.478857
Target:  5'- uCGaUGUUGCGGaGGACGCCaGCCUUc -3'
miRNA:   3'- -GCaGCAGCGCUgCCUGUGGcCGGAAc -5'
7182 3' -58.3 NC_001900.1 + 27015 0.67 0.478857
Target:  5'- -cUCGUCGCGACGauGGCgACCguGGCCcUGa -3'
miRNA:   3'- gcAGCAGCGCUGC--CUG-UGG--CCGGaAC- -5'
7182 3' -58.3 NC_001900.1 + 48169 0.67 0.468027
Target:  5'- uGUCGaagccauUCGCGAauguuggguCGGGCugCGGCCc-- -3'
miRNA:   3'- gCAGC-------AGCGCU---------GCCUGugGCCGGaac -5'
7182 3' -58.3 NC_001900.1 + 25202 0.68 0.449623
Target:  5'- cCGagGUUGCGguuACGGGC-CUGGCCUUc -3'
miRNA:   3'- -GCagCAGCGC---UGCCUGuGGCCGGAAc -5'
7182 3' -58.3 NC_001900.1 + 36302 0.68 0.449623
Target:  5'- aCGUgGUCGCugaggauggucgGACGGGCGacgauCCGGCCc-- -3'
miRNA:   3'- -GCAgCAGCG------------CUGCCUGU-----GGCCGGaac -5'
7182 3' -58.3 NC_001900.1 + 25668 0.68 0.430689
Target:  5'- -aUCGcCGCGACGuGAggcggcacgguCACCGGCCg-- -3'
miRNA:   3'- gcAGCaGCGCUGC-CU-----------GUGGCCGGaac -5'
7182 3' -58.3 NC_001900.1 + 26900 0.68 0.412232
Target:  5'- cCGUCGcCGuCGGCGGu--CUGGCCUUc -3'
miRNA:   3'- -GCAGCaGC-GCUGCCuguGGCCGGAAc -5'
7182 3' -58.3 NC_001900.1 + 23445 0.68 0.412232
Target:  5'- -uUCGUC-CGuACGGAC-CCGGCCg-- -3'
miRNA:   3'- gcAGCAGcGC-UGCCUGuGGCCGGaac -5'
7182 3' -58.3 NC_001900.1 + 10489 0.68 0.412232
Target:  5'- aGagGcCGCGAUGGGCcUCGGCCUg- -3'
miRNA:   3'- gCagCaGCGCUGCCUGuGGCCGGAac -5'
7182 3' -58.3 NC_001900.1 + 4621 0.68 0.412232
Target:  5'- uCG-CGUgGCGGgGGACucCCGGCCa-- -3'
miRNA:   3'- -GCaGCAgCGCUgCCUGu-GGCCGGaac -5'
7182 3' -58.3 NC_001900.1 + 46360 0.73 0.204012
Target:  5'- aGUCGUCGCGAagccucUGGcCGCUGGCgUUGu -3'
miRNA:   3'- gCAGCAGCGCU------GCCuGUGGCCGgAAC- -5'
7182 3' -58.3 NC_001900.1 + 33644 1.08 0.000689
Target:  5'- gCGUCGUCGCGACGGACACCGGCCUUGu -3'
miRNA:   3'- -GCAGCAGCGCUGCCUGUGGCCGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.