miRNA: 3'- -GCGCUAcUUGUCUAG------------UGGC-UAGGgCA- -5'
miRNA: 3'- -GC-GCUaCUUGUCUaGUGGCUAGGgCa -5'
miRNA: 3'- gCGCUACUUGUCUAGu----GGcUAGGGca -5'
miRNA: 3'- gCGCUa-----CUUGUCU---AGUggCUAGG-GCa -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7184 | 3' | -52.7 | NC_001900.1 | + | 640 | 0.68 | 0.733732 |
|
Target: 5'- aCGCGAUaGGCGGAUCggaaacgaucgcGCCGgAUCCgGUg -3' miRNA: 3'- -GCGCUAcUUGUCUAG------------UGGC-UAGGgCA- -5' |
|||||||
| 7184 | 3' | -52.7 | NC_001900.1 | + | 36221 | 0.68 | 0.712046 |
|
Target: 5'- aCGuCGAaGGACAGAcCGCCGAUCUgGc -3' miRNA: 3'- -GC-GCUaCUUGUCUaGUGGCUAGGgCa -5' |
|||||||
| 7184 | 3' | -52.7 | NC_001900.1 | + | 41344 | 0.72 | 0.502145 |
|
Target: 5'- gGCGGUGAACGGGUCuuugcCCcAUCCCu- -3' miRNA: 3'- gCGCUACUUGUCUAGu----GGcUAGGGca -5' |
|||||||
| 7184 | 3' | -52.7 | NC_001900.1 | + | 33530 | 0.66 | 0.824685 |
|
Target: 5'- gGCGAgaggccGAACAGAuccUCGuuGAUCCaCGa -3' miRNA: 3'- gCGCUa-----CUUGUCU---AGUggCUAGG-GCa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home