miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7185 3' -56.2 NC_001900.1 + 42464 0.66 0.616239
Target:  5'- cAGCGUCGGUaccuUCGaCUuCAGCGCg -3'
miRNA:   3'- -UCGUAGCCGacuuAGCgGAcGUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 37330 0.66 0.582913
Target:  5'- cAGC-UCGGUgauucGAguGUCGCgaGCAGCGa -3'
miRNA:   3'- -UCGuAGCCGa----CU--UAGCGgaCGUCGCg -5'
7185 3' -56.2 NC_001900.1 + 18115 0.66 0.582913
Target:  5'- uGGCAUcuccCGGCUGGuuggCGuCCUGgcagacugcguCGGCGCa -3'
miRNA:   3'- -UCGUA----GCCGACUua--GC-GGAC-----------GUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 46535 0.66 0.581807
Target:  5'- uGGCAgacaCGGCa-GAUCGCUUGCAGguuagacCGCg -3'
miRNA:   3'- -UCGUa---GCCGacUUAGCGGACGUC-------GCG- -5'
7185 3' -56.2 NC_001900.1 + 16877 0.66 0.571876
Target:  5'- cAGCGuggaUCGGCgucgGGAUCGUCgccaucGCcGCGCc -3'
miRNA:   3'- -UCGU----AGCCGa---CUUAGCGGa-----CGuCGCG- -5'
7185 3' -56.2 NC_001900.1 + 36891 0.67 0.56089
Target:  5'- cGGCcUCGGC-GAAguaguccuUCGCCUGCucGgGCu -3'
miRNA:   3'- -UCGuAGCCGaCUU--------AGCGGACGu-CgCG- -5'
7185 3' -56.2 NC_001900.1 + 46818 0.67 0.56089
Target:  5'- aAGUcUCGGUUGuucaGCUccggGCAGCGCa -3'
miRNA:   3'- -UCGuAGCCGACuuagCGGa---CGUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 1068 0.67 0.539102
Target:  5'- cGCAUgGGCggaagaGGAUcCGCCgguagcgGCGGUGCc -3'
miRNA:   3'- uCGUAgCCGa-----CUUA-GCGGa------CGUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 20512 0.67 0.527241
Target:  5'- gGGCGU-GGCUGAagcggacgGUUGCCcuggagaugcgcgUGCAGCaGCg -3'
miRNA:   3'- -UCGUAgCCGACU--------UAGCGG-------------ACGUCG-CG- -5'
7185 3' -56.2 NC_001900.1 + 727 0.67 0.521882
Target:  5'- cGCAgCGGuCUGGAaCGUCuaccgcagccgcuggUGCGGCGCg -3'
miRNA:   3'- uCGUaGCC-GACUUaGCGG---------------ACGUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 43331 0.67 0.521882
Target:  5'- cGGCGUCGGCggucaucgagguuggUGAGccCGCCguugaucCGGCGCg -3'
miRNA:   3'- -UCGUAGCCG---------------ACUUa-GCGGac-----GUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 43605 0.68 0.465514
Target:  5'- uGCAUCcGCaGGAcCGCCgccgucucaUGCGGCGCg -3'
miRNA:   3'- uCGUAGcCGaCUUaGCGG---------ACGUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 39879 0.69 0.445444
Target:  5'- cGCcgUGGCgGuacAUCGCgUGCAGCaGCg -3'
miRNA:   3'- uCGuaGCCGaCu--UAGCGgACGUCG-CG- -5'
7185 3' -56.2 NC_001900.1 + 7807 0.69 0.435593
Target:  5'- aGGCgAUCGGCaagccgCGCCccGCAGCGUg -3'
miRNA:   3'- -UCG-UAGCCGacuua-GCGGa-CGUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 39913 0.69 0.425868
Target:  5'- cGUGUCGGCUucAUCaGCgCgaacGCAGCGCg -3'
miRNA:   3'- uCGUAGCCGAcuUAG-CG-Ga---CGUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 34382 0.69 0.416274
Target:  5'- gGGCGUUGGCguuccUGAuccCGCCgaUGCGGCGg -3'
miRNA:   3'- -UCGUAGCCG-----ACUua-GCGG--ACGUCGCg -5'
7185 3' -56.2 NC_001900.1 + 18310 0.7 0.388301
Target:  5'- cGGCAUCGGUUcGAugAUCaGCuCUGCGGUGa -3'
miRNA:   3'- -UCGUAGCCGA-CU--UAG-CG-GACGUCGCg -5'
7185 3' -56.2 NC_001900.1 + 31555 0.72 0.284976
Target:  5'- gAGCGUCGacagcggaccaccgaGCUGAcccAUCGCCUGCAGa-- -3'
miRNA:   3'- -UCGUAGC---------------CGACU---UAGCGGACGUCgcg -5'
7185 3' -56.2 NC_001900.1 + 30391 0.74 0.19488
Target:  5'- --gGUCGaGCUG---CGCCUGCAGCGCc -3'
miRNA:   3'- ucgUAGC-CGACuuaGCGGACGUCGCG- -5'
7185 3' -56.2 NC_001900.1 + 17676 0.75 0.174697
Target:  5'- uGCA--GGCUGu-UgGCCUGCGGCGCa -3'
miRNA:   3'- uCGUagCCGACuuAgCGGACGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.