miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7185 5' -58.4 NC_001900.1 + 31325 1.14 0.000202
Target:  5'- aGCGCAGUGCCGAGGGUCUCAGCGACCa -3'
miRNA:   3'- -CGCGUCACGGCUCCCAGAGUCGCUGG- -5'
7185 5' -58.4 NC_001900.1 + 18155 0.74 0.169998
Target:  5'- gGCGCAGUcGCCGAguGGGUCggcuccugguccagCGGUGugCa -3'
miRNA:   3'- -CGCGUCA-CGGCU--CCCAGa-------------GUCGCugG- -5'
7185 5' -58.4 NC_001900.1 + 31391 0.72 0.218883
Target:  5'- -aGCAucGUGCCGAGGGUgUCGGCcAgCg -3'
miRNA:   3'- cgCGU--CACGGCUCCCAgAGUCGcUgG- -5'
7185 5' -58.4 NC_001900.1 + 45732 0.72 0.242576
Target:  5'- cCGCAG-GCCaGGGGGUgggcugCUUGGUGACCg -3'
miRNA:   3'- cGCGUCaCGG-CUCCCA------GAGUCGCUGG- -5'
7185 5' -58.4 NC_001900.1 + 26083 0.71 0.275149
Target:  5'- cGCcCGGacaagGgCGGGGGUCaucUCGGCGACCg -3'
miRNA:   3'- -CGcGUCa----CgGCUCCCAG---AGUCGCUGG- -5'
7185 5' -58.4 NC_001900.1 + 20019 0.7 0.296323
Target:  5'- cGCGC--UGCUG-GGGUCUCgaaugAGUGGCCu -3'
miRNA:   3'- -CGCGucACGGCuCCCAGAG-----UCGCUGG- -5'
7185 5' -58.4 NC_001900.1 + 47273 0.7 0.311129
Target:  5'- aGCG-AGUcGCCGAuGGUCaCAGUGACCc -3'
miRNA:   3'- -CGCgUCA-CGGCUcCCAGaGUCGCUGG- -5'
7185 5' -58.4 NC_001900.1 + 47437 0.7 0.318741
Target:  5'- aGCGCGcUGaCCGGGGGUgUCGccacCGGCCg -3'
miRNA:   3'- -CGCGUcAC-GGCUCCCAgAGUc---GCUGG- -5'
7185 5' -58.4 NC_001900.1 + 24038 0.7 0.332
Target:  5'- cGCGCcaaccucGGUGCCGAGGcGgcuaucccggCAGgGACCg -3'
miRNA:   3'- -CGCG-------UCACGGCUCC-Caga-------GUCgCUGG- -5'
7185 5' -58.4 NC_001900.1 + 9382 0.69 0.342409
Target:  5'- aGCGaCAGgcUGUCGAGGGUuuccggCUCGGgGACg -3'
miRNA:   3'- -CGC-GUC--ACGGCUCCCA------GAGUCgCUGg -5'
7185 5' -58.4 NC_001900.1 + 32041 0.68 0.420753
Target:  5'- aGCGCGG-GCaucauGGUCUCGGCuGCCg -3'
miRNA:   3'- -CGCGUCaCGgcuc-CCAGAGUCGcUGG- -5'
7185 5' -58.4 NC_001900.1 + 38574 0.66 0.498764
Target:  5'- -aGCAG-GCCGAGGcccaUC-GCGGCCu -3'
miRNA:   3'- cgCGUCaCGGCUCCcag-AGuCGCUGG- -5'
7185 5' -58.4 NC_001900.1 + 17194 0.66 0.519282
Target:  5'- aCGUGGUGUCGcAGGGUC-CGG-GGCUc -3'
miRNA:   3'- cGCGUCACGGC-UCCCAGaGUCgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.