miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7186 3' -55.1 NC_001900.1 + 16982 0.68 0.552244
Target:  5'- -aGCCGgugUGGUCGcACUCggcaUGGACGGCa -3'
miRNA:   3'- uaCGGCa--ACUAGUcUGGG----ACCUGCUG- -5'
7186 3' -55.1 NC_001900.1 + 31973 0.66 0.675124
Target:  5'- cGUGCCGUcuucgaacgcgaUGAUCAGgacACCCUcuugggugucgaGGAuCGGCu -3'
miRNA:   3'- -UACGGCA------------ACUAGUC---UGGGA------------CCU-GCUG- -5'
7186 3' -55.1 NC_001900.1 + 18004 0.67 0.585467
Target:  5'- -cGUCGUUGAacaccCAGAggaUCUGGACGGCu -3'
miRNA:   3'- uaCGGCAACUa----GUCUg--GGACCUGCUG- -5'
7186 3' -55.1 NC_001900.1 + 26149 0.69 0.456869
Target:  5'- -aGaCCGUUGAcCAGAgCCUGGGgGAUc -3'
miRNA:   3'- uaC-GGCAACUaGUCUgGGACCUgCUG- -5'
7186 3' -55.1 NC_001900.1 + 10901 0.7 0.446806
Target:  5'- cGUGCCaccgGAUCcagcAGuuCCUGGACGACg -3'
miRNA:   3'- -UACGGcaa-CUAG----UCugGGACCUGCUG- -5'
7186 3' -55.1 NC_001900.1 + 35906 0.71 0.353534
Target:  5'- -aGCCGc-GAUCAGGCgCUGGGCGuCu -3'
miRNA:   3'- uaCGGCaaCUAGUCUGgGACCUGCuG- -5'
7186 3' -55.1 NC_001900.1 + 32208 0.73 0.296911
Target:  5'- -cGCUGUgcgGGUCAGAUCCaGGaACGACu -3'
miRNA:   3'- uaCGGCAa--CUAGUCUGGGaCC-UGCUG- -5'
7186 3' -55.1 NC_001900.1 + 34151 0.76 0.178961
Target:  5'- -cGCCGagccUGAUCAGGCCCUGGAUu-- -3'
miRNA:   3'- uaCGGCa---ACUAGUCUGGGACCUGcug -5'
7186 3' -55.1 NC_001900.1 + 30773 1.08 0.000859
Target:  5'- gAUGCCGUUGAUCAGACCCUGGACGACg -3'
miRNA:   3'- -UACGGCAACUAGUCUGGGACCUGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.