miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7186 5' -56.3 NC_001900.1 + 37448 0.66 0.645191
Target:  5'- cCGAccaCAGCCuuGAGCUgcuUGCGgUCAUCGa -3'
miRNA:   3'- -GCUa--GUCGGucCUCGG---ACGC-AGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 21075 0.66 0.612094
Target:  5'- uGAUCuucgugcccGCCGGGGGCg-GCGUCAaCGu -3'
miRNA:   3'- gCUAGu--------CGGUCCUCGgaCGCAGUaGC- -5'
7186 5' -56.3 NC_001900.1 + 33723 0.66 0.601084
Target:  5'- gGAaC-GCCAGGAGCUggugcaGCGUCAgcUCGu -3'
miRNA:   3'- gCUaGuCGGUCCUCGGa-----CGCAGU--AGC- -5'
7186 5' -56.3 NC_001900.1 + 42222 0.66 0.601084
Target:  5'- aCGAUCAGCgCAGGgaAGuCCUcguagagcGCGUCGUaCGc -3'
miRNA:   3'- -GCUAGUCG-GUCC--UC-GGA--------CGCAGUA-GC- -5'
7186 5' -56.3 NC_001900.1 + 43911 0.66 0.601084
Target:  5'- gCGGUCGuuCCAGGcGCgUGCGcCGUCGu -3'
miRNA:   3'- -GCUAGUc-GGUCCuCGgACGCaGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 40585 0.66 0.590101
Target:  5'- gCGGUgaCAGCCAGGAGuCCU-CGgccgCGUUGa -3'
miRNA:   3'- -GCUA--GUCGGUCCUC-GGAcGCa---GUAGC- -5'
7186 5' -56.3 NC_001900.1 + 27458 0.66 0.586813
Target:  5'- gGAUCAGCCuGGGGCCgagccGCacggccuugagccgGcCGUCGg -3'
miRNA:   3'- gCUAGUCGGuCCUCGGa----CG--------------CaGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 39890 0.67 0.561732
Target:  5'- gGAUCAGCgAucuccuccuguccggGGAGCggGCuGUCAUCGg -3'
miRNA:   3'- gCUAGUCGgU---------------CCUCGgaCG-CAGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 16968 0.68 0.525234
Target:  5'- gCGuUCGGCgCuGGAGCCgGUGUgGUCGc -3'
miRNA:   3'- -GCuAGUCG-GuCCUCGGaCGCAgUAGC- -5'
7186 5' -56.3 NC_001900.1 + 20365 0.68 0.525234
Target:  5'- uCGA-CGGCCAGGAGC-UGCccugGUaCAUCGc -3'
miRNA:   3'- -GCUaGUCGGUCCUCGgACG----CA-GUAGC- -5'
7186 5' -56.3 NC_001900.1 + 25256 0.68 0.525234
Target:  5'- cCGA-UAGCCGaccGGAGCC--CGUCGUCGg -3'
miRNA:   3'- -GCUaGUCGGU---CCUCGGacGCAGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 25643 0.68 0.473324
Target:  5'- cCGGUCAGCCAuGuGCUcGCGgaUCAUCGc -3'
miRNA:   3'- -GCUAGUCGGUcCuCGGaCGC--AGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 31352 0.69 0.463249
Target:  5'- aCGGUCAGCaCAGGccccagAGCCUGCagagcgcccGUCAgcaUCGu -3'
miRNA:   3'- -GCUAGUCG-GUCC------UCGGACG---------CAGU---AGC- -5'
7186 5' -56.3 NC_001900.1 + 8637 0.71 0.352159
Target:  5'- uGGUCGgcuGCCGGGucuccgacGGCCUGCuguucGUCAUCGa -3'
miRNA:   3'- gCUAGU---CGGUCC--------UCGGACG-----CAGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 5741 0.71 0.343794
Target:  5'- aCGGUCGGCCcgacgugaGGGAGCCaGCGUgagcaaCGUCu -3'
miRNA:   3'- -GCUAGUCGG--------UCCUCGGaCGCA------GUAGc -5'
7186 5' -56.3 NC_001900.1 + 29802 0.72 0.311777
Target:  5'- gCGA-CAGCCAGGAccguggucccuGCUUcGCGUCGUUGa -3'
miRNA:   3'- -GCUaGUCGGUCCU-----------CGGA-CGCAGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 35553 0.73 0.268086
Target:  5'- aGAUCAGCCuGGAGCUgguagGUGUacgcccCGUCGg -3'
miRNA:   3'- gCUAGUCGGuCCUCGGa----CGCA------GUAGC- -5'
7186 5' -56.3 NC_001900.1 + 42468 0.75 0.190473
Target:  5'- uGAaCAGCCAGG-GCUUGC-UCAUCGg -3'
miRNA:   3'- gCUaGUCGGUCCuCGGACGcAGUAGC- -5'
7186 5' -56.3 NC_001900.1 + 28141 0.75 0.185401
Target:  5'- cCGGUgAGCCAGGAGCCgccgaagGCgGUC-UCGg -3'
miRNA:   3'- -GCUAgUCGGUCCUCGGa------CG-CAGuAGC- -5'
7186 5' -56.3 NC_001900.1 + 30813 1.09 0.000666
Target:  5'- uCGAUCAGCCAGGAGCCUGCGUCAUCGa -3'
miRNA:   3'- -GCUAGUCGGUCCUCGGACGCAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.