miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7190 5' -57.8 NC_001900.1 + 40299 0.66 0.57224
Target:  5'- -gUGGCCGgucggcagugagccgCUgCGGCCGuGGUUGGCc -3'
miRNA:   3'- ggACCGGCa--------------GAgGUCGGU-CCAACUGc -5'
7190 5' -57.8 NC_001900.1 + 38366 0.67 0.518372
Target:  5'- aCCgGGCuCGUCgccgUCAGCCAGGaUGuucACGu -3'
miRNA:   3'- -GGaCCG-GCAGa---GGUCGGUCCaAC---UGC- -5'
7190 5' -57.8 NC_001900.1 + 2633 0.67 0.508035
Target:  5'- cCCUGGgCGUCguuaagCgGGCCAGGUgccuGCu -3'
miRNA:   3'- -GGACCgGCAGa-----GgUCGGUCCAac--UGc -5'
7190 5' -57.8 NC_001900.1 + 28712 0.67 0.477573
Target:  5'- uCCUGGCCGUCgaagaagaCGGCCcGGUcUGuCa -3'
miRNA:   3'- -GGACCGGCAGag------GUCGGuCCA-ACuGc -5'
7190 5' -57.8 NC_001900.1 + 20350 0.67 0.46762
Target:  5'- aCCgGGCCGUCUUCuucgacGGCCAGGa----- -3'
miRNA:   3'- -GGaCCGGCAGAGG------UCGGUCCaacugc -5'
7190 5' -57.8 NC_001900.1 + 34755 0.68 0.448041
Target:  5'- aCgGGUCGUCuuguucgcUCUGGCCAGGUUGGu- -3'
miRNA:   3'- gGaCCGGCAG--------AGGUCGGUCCAACUgc -5'
7190 5' -57.8 NC_001900.1 + 32050 0.69 0.410298
Target:  5'- --cGGCCGUU---GGCgAGGUUGACGa -3'
miRNA:   3'- ggaCCGGCAGaggUCGgUCCAACUGC- -5'
7190 5' -57.8 NC_001900.1 + 19689 0.69 0.410298
Target:  5'- cCCUGGCCG-UUCCcGCCGGGagu-CGa -3'
miRNA:   3'- -GGACCGGCaGAGGuCGGUCCaacuGC- -5'
7190 5' -57.8 NC_001900.1 + 20968 0.69 0.374596
Target:  5'- aCCUGGCUGgagaCGGCCAGGUcGAa- -3'
miRNA:   3'- -GGACCGGCagagGUCGGUCCAaCUgc -5'
7190 5' -57.8 NC_001900.1 + 29278 0.69 0.366005
Target:  5'- cCCcGG-CGUCUUgAGCCGgcGGUUGGCGa -3'
miRNA:   3'- -GGaCCgGCAGAGgUCGGU--CCAACUGC- -5'
7190 5' -57.8 NC_001900.1 + 31014 0.7 0.341057
Target:  5'- --cGGCCG----CAGCCAGGUUGAUGa -3'
miRNA:   3'- ggaCCGGCagagGUCGGUCCAACUGC- -5'
7190 5' -57.8 NC_001900.1 + 33965 0.72 0.247428
Target:  5'- aCCa-GCCGguggCUCCAGuCCAGGUcGACGg -3'
miRNA:   3'- -GGacCGGCa---GAGGUC-GGUCCAaCUGC- -5'
7190 5' -57.8 NC_001900.1 + 28099 1.11 0.000373
Target:  5'- aCCUGGCCGUCUCCAGCCAGGUUGACGa -3'
miRNA:   3'- -GGACCGGCAGAGGUCGGUCCAACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.