miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7191 5' -49.4 NC_001900.1 + 29961 0.68 0.877329
Target:  5'- -aUGAcgUGAcCGGGGUCAGCgAGGaaGCa -3'
miRNA:   3'- caACU--ACUuGCUCCAGUCG-UCUagCG- -5'
7191 5' -49.4 NC_001900.1 + 20272 0.69 0.851784
Target:  5'- -gUGAUGAAccacCGGGGUCgAGCAaagCGCa -3'
miRNA:   3'- caACUACUU----GCUCCAG-UCGUcuaGCG- -5'
7191 5' -49.4 NC_001900.1 + 8868 0.72 0.684445
Target:  5'- --cGGUGGcguucgacauGCGcGGUCAGCAGAagcgauUCGCg -3'
miRNA:   3'- caaCUACU----------UGCuCCAGUCGUCU------AGCG- -5'
7191 5' -49.4 NC_001900.1 + 31418 0.68 0.892217
Target:  5'- -gUGGUGAACGcuGGcGUCAGCGccgugauGAUCGg -3'
miRNA:   3'- caACUACUUGC--UC-CAGUCGU-------CUAGCg -5'
7191 5' -49.4 NC_001900.1 + 27840 1.12 0.002328
Target:  5'- uGUUGAUGAACGAGGUCAGCAGAUCGCc -3'
miRNA:   3'- -CAACUACUUGCUCCAGUCGUCUAGCG- -5'
7191 5' -49.4 NC_001900.1 + 6318 0.76 0.448625
Target:  5'- --cGAUGGACGAGGUCcGCgAGAUgGUc -3'
miRNA:   3'- caaCUACUUGCUCCAGuCG-UCUAgCG- -5'
7191 5' -49.4 NC_001900.1 + 45754 0.71 0.729713
Target:  5'- cUUGGUGAccggguCGAGGUgggggaucgacCAGCGGAagUCGCg -3'
miRNA:   3'- cAACUACUu-----GCUCCA-----------GUCGUCU--AGCG- -5'
7191 5' -49.4 NC_001900.1 + 43822 0.7 0.804255
Target:  5'- cGUUGcgcGAGCGAGGauuUCGGCAGcGUCGa -3'
miRNA:   3'- -CAACua-CUUGCUCC---AGUCGUC-UAGCg -5'
7191 5' -49.4 NC_001900.1 + 37588 0.69 0.823948
Target:  5'- gGUUGAUGAACccaccuGGGGuUCGGgGGAUuaCGCa -3'
miRNA:   3'- -CAACUACUUG------CUCC-AGUCgUCUA--GCG- -5'
7191 5' -49.4 NC_001900.1 + 24853 0.69 0.842747
Target:  5'- --cGGUGAGCGuguuGUCAGCcccggAGAUCGUc -3'
miRNA:   3'- caaCUACUUGCuc--CAGUCG-----UCUAGCG- -5'
7191 5' -49.4 NC_001900.1 + 43365 0.66 0.948539
Target:  5'- cGUUGAuccggcgcgUGAccguuuCGAGGUCgcGGCGG-UCGCu -3'
miRNA:   3'- -CAACU---------ACUu-----GCUCCAG--UCGUCuAGCG- -5'
7191 5' -49.4 NC_001900.1 + 34589 0.67 0.91423
Target:  5'- --gGAUGuauuCGGGGUCAGgCGGuuUCGUg -3'
miRNA:   3'- caaCUACuu--GCUCCAGUC-GUCu-AGCG- -5'
7191 5' -49.4 NC_001900.1 + 6900 0.67 0.91423
Target:  5'- --cGggGGACGGGGaugacccguUCAGCGGccuggaGUCGCu -3'
miRNA:   3'- caaCuaCUUGCUCC---------AGUCGUC------UAGCG- -5'
7191 5' -49.4 NC_001900.1 + 23477 0.66 0.932184
Target:  5'- -cUGGUGAccaccacGCGGGGgCAGCGGcuGUCGa -3'
miRNA:   3'- caACUACU-------UGCUCCaGUCGUC--UAGCg -5'
7191 5' -49.4 NC_001900.1 + 48550 0.66 0.938321
Target:  5'- gGUUGGccgGAACGuAGGUUGucggccGCAGAUCGg -3'
miRNA:   3'- -CAACUa--CUUGC-UCCAGU------CGUCUAGCg -5'
7191 5' -49.4 NC_001900.1 + 41244 0.66 0.943581
Target:  5'- --cGGUGAuccacgcuGCGGGGcgCGGCuugccGAUCGCc -3'
miRNA:   3'- caaCUACU--------UGCUCCa-GUCGu----CUAGCG- -5'
7191 5' -49.4 NC_001900.1 + 16356 0.66 0.948539
Target:  5'- -gUGAUG-ACGAaaccgucacGUCGGCAGAcgaacUCGCg -3'
miRNA:   3'- caACUACuUGCUc--------CAGUCGUCU-----AGCG- -5'
7191 5' -49.4 NC_001900.1 + 33986 0.66 0.948539
Target:  5'- --aGGUcGACG-GGUCGGaCAGGUCGa -3'
miRNA:   3'- caaCUAcUUGCuCCAGUC-GUCUAGCg -5'
7191 5' -49.4 NC_001900.1 + 34127 0.66 0.948539
Target:  5'- --aGGUGGugGAucucGGUguGCGGA-CGCc -3'
miRNA:   3'- caaCUACUugCU----CCAguCGUCUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.