miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7194 5' -55.9 NC_001900.1 + 10634 0.68 0.532908
Target:  5'- cGGCCcAGGCcGuGAUCACUGCggggcuCGCCGg -3'
miRNA:   3'- -CCGGcUUCGaCuUUAGUGGCG------GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 34698 0.68 0.532908
Target:  5'- aGCCGAccGGC-GAA--CACCGCCuGCCa -3'
miRNA:   3'- cCGGCU--UCGaCUUuaGUGGCGG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 31298 0.68 0.543582
Target:  5'- -aCCGAAGUUGAucguggcguuGUCGgUGCCGCCc -3'
miRNA:   3'- ccGGCUUCGACUu---------UAGUgGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 10453 0.68 0.551095
Target:  5'- cGCCGAGcGCgagGAGAUgCGCCGCUgggacgaggaagagGCCGc -3'
miRNA:   3'- cCGGCUU-CGa--CUUUA-GUGGCGG--------------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 6033 0.68 0.554325
Target:  5'- aGCUGGAGCgaGuuGUC-CgCGCCGCCa -3'
miRNA:   3'- cCGGCUUCGa-CuuUAGuG-GCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 48898 0.67 0.575987
Target:  5'- aGCUGGAGCUGAGGccggcauucgCAUCGUCGCa- -3'
miRNA:   3'- cCGGCUUCGACUUUa---------GUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 723 0.67 0.575987
Target:  5'- gGGCCGcAGCggucugGAAcGUCuACCGCaGCCGc -3'
miRNA:   3'- -CCGGCuUCGa-----CUU-UAG-UGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 32658 0.67 0.586892
Target:  5'- cGGUCGAAGCUGAGGUaGCaguuCCgGCCa -3'
miRNA:   3'- -CCGGCUUCGACUUUAgUGgc--GG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 40300 0.67 0.586892
Target:  5'- uGGCCGGucGGCagUGAGc-CGCUGCgGCCGu -3'
miRNA:   3'- -CCGGCU--UCG--ACUUuaGUGGCGgCGGC- -5'
7194 5' -55.9 NC_001900.1 + 43069 0.67 0.597835
Target:  5'- aGGCCGAucauGGUUGcccaGGAUCAgCCGCUugcggccugGCCGg -3'
miRNA:   3'- -CCGGCU----UCGAC----UUUAGU-GGCGG---------CGGC- -5'
7194 5' -55.9 NC_001900.1 + 5608 0.67 0.597835
Target:  5'- uGUCGGAGCUGcGcugggcaggcAUCGgUGCCGCCu -3'
miRNA:   3'- cCGGCUUCGACuU----------UAGUgGCGGCGGc -5'
7194 5' -55.9 NC_001900.1 + 4092 0.67 0.608807
Target:  5'- aGGCCGAcaAGaucccGAAcCGCUGCCGCUGg -3'
miRNA:   3'- -CCGGCU--UCgac--UUUaGUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 26882 0.66 0.663777
Target:  5'- aGGUCGcaacGGCcgGAAccGUCGCCGUCGgCGg -3'
miRNA:   3'- -CCGGCu---UCGa-CUU--UAGUGGCGGCgGC- -5'
7194 5' -55.9 NC_001900.1 + 27899 0.66 0.685631
Target:  5'- aGuCCGAucGCUGG----GCCGCUGCCGu -3'
miRNA:   3'- cC-GGCUu-CGACUuuagUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 43484 0.69 0.501369
Target:  5'- cGGCCGGccAGCUcGGug-CGCCGCCuGCUc -3'
miRNA:   3'- -CCGGCU--UCGA-CUuuaGUGGCGG-CGGc -5'
7194 5' -55.9 NC_001900.1 + 8478 0.69 0.501369
Target:  5'- cGGCCGAGGacucCUGGcuGUCACCGCaggaguggaacCGCUGc -3'
miRNA:   3'- -CCGGCUUC----GACUu-UAGUGGCG-----------GCGGC- -5'
7194 5' -55.9 NC_001900.1 + 15032 0.69 0.460659
Target:  5'- cGCCGAAGCaGg---CACCGCUGCa- -3'
miRNA:   3'- cCGGCUUCGaCuuuaGUGGCGGCGgc -5'
7194 5' -55.9 NC_001900.1 + 15778 0.69 0.460659
Target:  5'- cGUCG-AGCUGAA---GCCGCUGCUGa -3'
miRNA:   3'- cCGGCuUCGACUUuagUGGCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 48671 0.69 0.450755
Target:  5'- gGGCUGucgGGCUGucGUCACgcugucgcuguCGUCGCCGg -3'
miRNA:   3'- -CCGGCu--UCGACuuUAGUG-----------GCGGCGGC- -5'
7194 5' -55.9 NC_001900.1 + 14706 0.7 0.431305
Target:  5'- -cCCGAAGCUGcacUCGCUGCCGgUGg -3'
miRNA:   3'- ccGGCUUCGACuuuAGUGGCGGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.