Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 7194 | 5' | -55.9 | NC_001900.1 | + | 35558 | 0.66 | 0.652802 |
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Target: 5'- aGCCuGGAGCUGGuagguGUaCGCC-CCGUCGg -3' miRNA: 3'- cCGG-CUUCGACUu----UA-GUGGcGGCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 25763 | 0.66 | 0.657195 |
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Target: 5'- gGGCCGAccGccgugguguugacucGCUcGAAGUCAUCcCCGCCa -3' miRNA: 3'- -CCGGCU--U---------------CGA-CUUUAGUGGcGGCGGc -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 26882 | 0.66 | 0.663777 |
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Target: 5'- aGGUCGcaacGGCcgGAAccGUCGCCGUCGgCGg -3' miRNA: 3'- -CCGGCu---UCGa-CUU--UAGUGGCGGCgGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 17616 | 0.66 | 0.674724 |
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Target: 5'- uGGCCGAucggauccaGGUagUGAucgCGCUGCCGCg- -3' miRNA: 3'- -CCGGCU---------UCG--ACUuuaGUGGCGGCGgc -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 20369 | 0.66 | 0.674724 |
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Target: 5'- cGGCCaGGAGCUGcccuGGUaCAUCGCCGa-- -3' miRNA: 3'- -CCGG-CUUCGACu---UUA-GUGGCGGCggc -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 47817 | 0.66 | 0.685631 |
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Target: 5'- cGCCGccAGCUc----CGCUGCCGCCGc -3' miRNA: 3'- cCGGCu-UCGAcuuuaGUGGCGGCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 27899 | 0.66 | 0.685631 |
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Target: 5'- aGuCCGAucGCUGG----GCCGCUGCCGu -3' miRNA: 3'- cC-GGCUu-CGACUuuagUGGCGGCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 27924 | 0.66 | 0.685631 |
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Target: 5'- cGGCCagGAAGCUGguGUCGgUGCC-UCGu -3' miRNA: 3'- -CCGG--CUUCGACuuUAGUgGCGGcGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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