Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7194 | 5' | -55.9 | NC_001900.1 | + | 44895 | 0.73 | 0.273637 |
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Target: 5'- uGCCGGuagacgacgcgAGUuguuUGggGUCACCGCCgGCCGc -3' miRNA: 3'- cCGGCU-----------UCG----ACuuUAGUGGCGG-CGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 45243 | 0.69 | 0.501369 |
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Target: 5'- aGCCGuuGaaGAAGUUcuugACCGCCGUCGa -3' miRNA: 3'- cCGGCuuCgaCUUUAG----UGGCGGCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 45612 | 0.67 | 0.619799 |
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Target: 5'- uGGCCGggGU----GUCGgUGCCGuuGa -3' miRNA: 3'- -CCGGCuuCGacuuUAGUgGCGGCggC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 45764 | 0.69 | 0.491037 |
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Target: 5'- gGGUCGAGGUggGGGAUCGaccagcggaagUCGCgGCCGg -3' miRNA: 3'- -CCGGCUUCGa-CUUUAGU-----------GGCGgCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 47817 | 0.66 | 0.685631 |
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Target: 5'- cGCCGccAGCUc----CGCUGCCGCCGc -3' miRNA: 3'- cCGGCu-UCGAcuuuaGUGGCGGCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 47888 | 0.7 | 0.403076 |
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Target: 5'- cGGCCGcuuccGGCggcc--CACCGCCGCCu -3' miRNA: 3'- -CCGGCu----UCGacuuuaGUGGCGGCGGc -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 48671 | 0.69 | 0.450755 |
|
Target: 5'- gGGCUGucgGGCUGucGUCACgcugucgcuguCGUCGCCGg -3' miRNA: 3'- -CCGGCu--UCGACuuUAGUG-----------GCGGCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 48898 | 0.67 | 0.575987 |
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Target: 5'- aGCUGGAGCUGAGGccggcauucgCAUCGUCGCa- -3' miRNA: 3'- cCGGCUUCGACUUUa---------GUGGCGGCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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