Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7194 | 5' | -55.9 | NC_001900.1 | + | 8466 | 0.69 | 0.491037 |
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Target: 5'- gGGCUGggGCUGAuGUCugC-CUGgCGu -3' miRNA: 3'- -CCGGCuuCGACUuUAGugGcGGCgGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 8320 | 0.66 | 0.652802 |
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Target: 5'- cGGCgcucgCGgcGCUGAcgacAUCGCUGaCCGCUGg -3' miRNA: 3'- -CCG-----GCuuCGACUu---UAGUGGC-GGCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 6447 | 0.7 | 0.412356 |
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Target: 5'- cGCUGAGGCUGAGGUCGa-GCgCGUCa -3' miRNA: 3'- cCGGCUUCGACUUUAGUggCG-GCGGc -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 6033 | 0.68 | 0.554325 |
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Target: 5'- aGCUGGAGCgaGuuGUC-CgCGCCGCCa -3' miRNA: 3'- cCGGCUUCGa-CuuUAGuG-GCGGCGGc -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 5608 | 0.67 | 0.597835 |
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Target: 5'- uGUCGGAGCUGcGcugggcaggcAUCGgUGCCGCCu -3' miRNA: 3'- cCGGCUUCGACuU----------UAGUgGCGGCGGc -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 5428 | 0.85 | 0.042166 |
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Target: 5'- -cCCGAAGCUGAAGUCGCCGUacgCGCCGc -3' miRNA: 3'- ccGGCUUCGACUUUAGUGGCG---GCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 4092 | 0.67 | 0.608807 |
|
Target: 5'- aGGCCGAcaAGaucccGAAcCGCUGCCGCUGg -3' miRNA: 3'- -CCGGCU--UCgac--UUUaGUGGCGGCGGC- -5' |
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| 7194 | 5' | -55.9 | NC_001900.1 | + | 723 | 0.67 | 0.575987 |
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Target: 5'- gGGCCGcAGCggucugGAAcGUCuACCGCaGCCGc -3' miRNA: 3'- -CCGGCuUCGa-----CUU-UAG-UGGCGgCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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