Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7195 | 5' | -58.8 | NC_001900.1 | + | 3786 | 0.7 | 0.268338 |
Target: 5'- -gGCgucgucaccuucgCGGUCGGCgugaccUCGACGGCGGUCa -3' miRNA: 3'- gaCGa------------GCCGGCCG------AGUUGCUGCCAGa -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 26886 | 0.66 | 0.513657 |
Target: 5'- -cGCaaCGGCCGGaaccgUCGccguCGGCGGUCUg -3' miRNA: 3'- gaCGa-GCCGGCCg----AGUu---GCUGCCAGA- -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 23588 | 0.66 | 0.513657 |
Target: 5'- -cGCgccuaCGGUCGGCaUCAcCGACGGggUCUa -3' miRNA: 3'- gaCGa----GCCGGCCG-AGUuGCUGCC--AGA- -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 1615 | 0.66 | 0.493194 |
Target: 5'- gCUuCUCGGCCGGUggCGACaccccCGGUCa -3' miRNA: 3'- -GAcGAGCCGGCCGa-GUUGcu---GCCAGa -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 45684 | 0.66 | 0.473113 |
Target: 5'- -gGC-CGGCCGGcCUCAccacaccuuucGCGugGGcCa -3' miRNA: 3'- gaCGaGCCGGCC-GAGU-----------UGCugCCaGa -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 43313 | 0.66 | 0.470136 |
Target: 5'- uUGCUCacGCUGGCUCccucacgucgggccGAcCGugGGUCUg -3' miRNA: 3'- gACGAGc-CGGCCGAG--------------UU-GCugCCAGA- -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 30464 | 0.68 | 0.396394 |
Target: 5'- gUGCUcguacggcaccaaCGGCCGGCUC-ACGuCGGg-- -3' miRNA: 3'- gACGA-------------GCCGGCCGAGuUGCuGCCaga -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 33299 | 0.68 | 0.387489 |
Target: 5'- -cGCgUCGGCCGGCgCAGgcCGcaccuccACGGUCUg -3' miRNA: 3'- gaCG-AGCCGGCCGaGUU--GC-------UGCCAGA- -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 31611 | 0.68 | 0.370938 |
Target: 5'- -gGUUCGGCCGGUUCGGgcCGACcGGa-- -3' miRNA: 3'- gaCGAGCCGGCCGAGUU--GCUG-CCaga -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 4820 | 0.68 | 0.365812 |
Target: 5'- aCUGCUCGGguCUGGUUCugcagacggcagccuGguACGGCGGUCg -3' miRNA: 3'- -GACGAGCC--GGCCGAG---------------U--UGCUGCCAGa -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 2355 | 0.69 | 0.354044 |
Target: 5'- -aGUUgGGCCGGCUCGaaGCGuCGG-Ca -3' miRNA: 3'- gaCGAgCCGGCCGAGU--UGCuGCCaGa -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 10502 | 0.69 | 0.329736 |
Target: 5'- -gGcCUCGGCCuGCUgGgcACGAUGGUCg -3' miRNA: 3'- gaC-GAGCCGGcCGAgU--UGCUGCCAGa -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 17465 | 0.73 | 0.179129 |
Target: 5'- cCUGUUCaaCCGGCUCAugGAgucCGGUCUg -3' miRNA: 3'- -GACGAGccGGCCGAGUugCU---GCCAGA- -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 21253 | 0.73 | 0.169813 |
Target: 5'- -aGCUC-GCCGuGCUCGGCG-CGGUCg -3' miRNA: 3'- gaCGAGcCGGC-CGAGUUGCuGCCAGa -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 23608 | 0.66 | 0.513658 |
Target: 5'- -gGCUCaGGCCGGUgCGACGACcaaGGa-- -3' miRNA: 3'- gaCGAG-CCGGCCGaGUUGCUG---CCaga -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 25899 | 1.07 | 0.000516 |
Target: 5'- uCUGCUCGGCCGGCUCAACGACGGUCUg -3' miRNA: 3'- -GACGAGCCGGCCGAGUUGCUGCCAGA- -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 38909 | 0.71 | 0.238807 |
Target: 5'- -aGCggaGGCCGGaugUCAGCGGCGGUa- -3' miRNA: 3'- gaCGag-CCGGCCg--AGUUGCUGCCAga -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 19289 | 0.7 | 0.269012 |
Target: 5'- aUGCcaagacggugaacuUCGGCCGGgUCuACGGCGGUg- -3' miRNA: 3'- gACG--------------AGCCGGCCgAGuUGCUGCCAga -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 21585 | 0.68 | 0.370938 |
Target: 5'- -cGCcgaCGGCCGGCUCAAgGccguGCGGcUCg -3' miRNA: 3'- gaCGa--GCCGGCCGAGUUgC----UGCC-AGa -5' |
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7195 | 5' | -58.8 | NC_001900.1 | + | 7108 | 0.68 | 0.40634 |
Target: 5'- -gGCuUCGGCCcggacucGCUCAACGucuccACGGUCa -3' miRNA: 3'- gaCG-AGCCGGc------CGAGUUGC-----UGCCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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