miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7196 5' -53.5 NC_001900.1 + 1996 0.68 0.699779
Target:  5'- gCCGACCuacgucgcagcGUGGGCGCG-UGUCauccgaGACu -3'
miRNA:   3'- -GGCUGG-----------CAUCCGCGCaACAGcaa---CUG- -5'
7196 5' -53.5 NC_001900.1 + 3070 0.74 0.385735
Target:  5'- gCCGACCcgaccGGCGgGaagGUCGUUGACg -3'
miRNA:   3'- -GGCUGGcau--CCGCgCaa-CAGCAACUG- -5'
7196 5' -53.5 NC_001900.1 + 3399 0.67 0.76346
Target:  5'- gCCGGCCGUGaGCGUGUgcGcCGUgaaGGCa -3'
miRNA:   3'- -GGCUGGCAUcCGCGCAa-CaGCAa--CUG- -5'
7196 5' -53.5 NC_001900.1 + 15778 0.67 0.746855
Target:  5'- gCCGGCCGa---CGCGUUGUCGaucacguucaagggUGACg -3'
miRNA:   3'- -GGCUGGCauccGCGCAACAGCa-------------ACUG- -5'
7196 5' -53.5 NC_001900.1 + 17887 0.68 0.664673
Target:  5'- gCCaGAUCGUAGGUGCGgucauucaGUUGGCc -3'
miRNA:   3'- -GG-CUGGCAUCCGCGCaacag---CAACUG- -5'
7196 5' -53.5 NC_001900.1 + 18068 0.68 0.721397
Target:  5'- gCGGCCGUGgugcaggcuGGCGCGUccaucgcGUCGUuccugaucggUGGCa -3'
miRNA:   3'- gGCUGGCAU---------CCGCGCAa------CAGCA----------ACUG- -5'
7196 5' -53.5 NC_001900.1 + 25142 0.74 0.367978
Target:  5'- -aGACCGcUGGG-GuCGUUGUCGUUGAUc -3'
miRNA:   3'- ggCUGGC-AUCCgC-GCAACAGCAACUG- -5'
7196 5' -53.5 NC_001900.1 + 25486 1.12 0.000925
Target:  5'- gCCGACCGUAGGCGCGUUGUCGUUGACg -3'
miRNA:   3'- -GGCUGGCAUCCGCGCAACAGCAACUG- -5'
7196 5' -53.5 NC_001900.1 + 28196 0.67 0.75312
Target:  5'- gCUGGCCuu--GUGCGaUGUCGUUGGCc -3'
miRNA:   3'- -GGCUGGcaucCGCGCaACAGCAACUG- -5'
7196 5' -53.5 NC_001900.1 + 42521 0.66 0.793614
Target:  5'- gCUGGCUGUAGGC-CGgUUGgaugcCGUUGAg -3'
miRNA:   3'- -GGCUGGCAUCCGcGC-AACa----GCAACUg -5'
7196 5' -53.5 NC_001900.1 + 43379 0.67 0.76346
Target:  5'- gUGACCGUuucgAGGuCGCGgcgGUCGcUGAg -3'
miRNA:   3'- gGCUGGCA----UCC-GCGCaa-CAGCaACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.