miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7198 5' -65.3 NC_001900.1 + 1173 0.68 0.145247
Target:  5'- -gGCGGCgGUGgaGCCGCCggaagcgGCCGGGg -3'
miRNA:   3'- aaCGCCGaCGCggCGGCGG-------UGGUCCa -5'
7198 5' -65.3 NC_001900.1 + 2461 0.67 0.170679
Target:  5'- --cCGGCUGCGUCcggGCUGCCACCGa-- -3'
miRNA:   3'- aacGCCGACGCGG---CGGCGGUGGUcca -5'
7198 5' -65.3 NC_001900.1 + 11037 0.67 0.175211
Target:  5'- gUGaagGGCUGgGCgaggGUCGCCACCGGGc -3'
miRNA:   3'- aACg--CCGACgCGg---CGGCGGUGGUCCa -5'
7198 5' -65.3 NC_001900.1 + 23065 0.68 0.149562
Target:  5'- -aGUGGCUGCGggaCaCCGCgaGCCAGGUa -3'
miRNA:   3'- aaCGCCGACGCg--GcGGCGg-UGGUCCA- -5'
7198 5' -65.3 NC_001900.1 + 24094 1.05 0.000159
Target:  5'- gUUGCGGCUGCGCCGCCGCCACCAGGUg -3'
miRNA:   3'- -AACGCCGACGCGGCGGCGGUGGUCCA- -5'
7198 5' -65.3 NC_001900.1 + 24968 0.68 0.145634
Target:  5'- -aGCGGCUGCcacgucuuGUCGCCGC-GCCAGu- -3'
miRNA:   3'- aaCGCCGACG--------CGGCGGCGgUGGUCca -5'
7198 5' -65.3 NC_001900.1 + 26029 0.66 0.199505
Target:  5'- gUUGUaGGC-GUGCCGCCguGCCGUCGGGUa -3'
miRNA:   3'- -AACG-CCGaCGCGGCGG--CGGUGGUCCA- -5'
7198 5' -65.3 NC_001900.1 + 29585 0.68 0.13441
Target:  5'- -aGCGGUccaccgGCaGCCGCCGgcCCAUCGGGUu -3'
miRNA:   3'- aaCGCCGa-----CG-CGGCGGC--GGUGGUCCA- -5'
7198 5' -65.3 NC_001900.1 + 29655 0.67 0.179849
Target:  5'- cUUGCGGCUGUaCCG-CGUCAcuCCGGGa -3'
miRNA:   3'- -AACGCCGACGcGGCgGCGGU--GGUCCa -5'
7198 5' -65.3 NC_001900.1 + 33050 0.68 0.145634
Target:  5'- gUGCuGCUGgccacCGCCGCCGCUACCGc-- -3'
miRNA:   3'- aACGcCGAC-----GCGGCGGCGGUGGUcca -5'
7198 5' -65.3 NC_001900.1 + 33091 0.71 0.080039
Target:  5'- --uCGGCU-UGCUGCCGCCACCcAGGUu -3'
miRNA:   3'- aacGCCGAcGCGGCGGCGGUGG-UCCA- -5'
7198 5' -65.3 NC_001900.1 + 38369 0.67 0.179849
Target:  5'- ---gGGCU-CGUCGCCGUCAgCCAGGa -3'
miRNA:   3'- aacgCCGAcGCGGCGGCGGU-GGUCCa -5'
7198 5' -65.3 NC_001900.1 + 40754 0.7 0.105069
Target:  5'- -aGCGccGCgaGCGCCGCCGugaaccaCCACCAGGc -3'
miRNA:   3'- aaCGC--CGa-CGCGGCGGC-------GGUGGUCCa -5'
7198 5' -65.3 NC_001900.1 + 42755 0.7 0.102518
Target:  5'- gUGCGGCUGCGCCG-----ACCAGGUu -3'
miRNA:   3'- aACGCCGACGCGGCggcggUGGUCCA- -5'
7198 5' -65.3 NC_001900.1 + 42807 0.71 0.080039
Target:  5'- -cGCGGCUGCGCCcgcgucgaucCCGCCccagAUCAGGg -3'
miRNA:   3'- aaCGCCGACGCGGc---------GGCGG----UGGUCCa -5'
7198 5' -65.3 NC_001900.1 + 45686 0.66 0.194422
Target:  5'- -aGCGcGUUGUGCuCGCCGCCGgucuCCAGu- -3'
miRNA:   3'- aaCGC-CGACGCG-GCGGCGGU----GGUCca -5'
7198 5' -65.3 NC_001900.1 + 47820 0.66 0.194422
Target:  5'- -cGCcaGCUccGCuGCCGCCGCCACCGaGUa -3'
miRNA:   3'- aaCGc-CGA--CG-CGGCGGCGGUGGUcCA- -5'
7198 5' -65.3 NC_001900.1 + 48331 0.68 0.152369
Target:  5'- -aGCGGCUGCGguagacguuccagaCCGCUGCgGCCcguGGc -3'
miRNA:   3'- aaCGCCGACGC--------------GGCGGCGgUGGu--CCa -5'
7198 5' -65.3 NC_001900.1 + 48526 0.69 0.123986
Target:  5'- gUGCGGUUaCGCCGCUGU--CCGGGUg -3'
miRNA:   3'- aACGCCGAcGCGGCGGCGguGGUCCA- -5'
7198 5' -65.3 NC_001900.1 + 48686 0.69 0.123986
Target:  5'- -cGUcacGCUGuCGCUGUCGUCGCCGGGUg -3'
miRNA:   3'- aaCGc--CGAC-GCGGCGGCGGUGGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.