miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7199 5' -56.8 NC_001900.1 + 3033 0.66 0.604949
Target:  5'- cCGGCGAcgGGUCCGCcugGAGaucgaGCG-GGCa -3'
miRNA:   3'- -GCCGCUa-CUAGGCG---CUCg----UGUaCCGa -5'
7199 5' -56.8 NC_001900.1 + 25018 0.66 0.572121
Target:  5'- uGGcCGGUGGUCC-CGGuGCcCGUGGCc -3'
miRNA:   3'- gCC-GCUACUAGGcGCU-CGuGUACCGa -5'
7199 5' -56.8 NC_001900.1 + 2673 0.67 0.518488
Target:  5'- aGGaGGUGA-CUGUGGGCACAcgUGGCc -3'
miRNA:   3'- gCCgCUACUaGGCGCUCGUGU--ACCGa -5'
7199 5' -56.8 NC_001900.1 + 6255 0.67 0.507989
Target:  5'- gGGCGG-GAUCgaCGCGGGCGCAgccGCg -3'
miRNA:   3'- gCCGCUaCUAG--GCGCUCGUGUac-CGa -5'
7199 5' -56.8 NC_001900.1 + 14370 0.67 0.507989
Target:  5'- aGGCGGUG-UUCGCcGGUcggcucGCAUGGCg -3'
miRNA:   3'- gCCGCUACuAGGCGcUCG------UGUACCGa -5'
7199 5' -56.8 NC_001900.1 + 42826 0.68 0.477062
Target:  5'- uGGuCGAccgaaUGAUCCGgGAGUGCguGUGGCc -3'
miRNA:   3'- gCC-GCU-----ACUAGGCgCUCGUG--UACCGa -5'
7199 5' -56.8 NC_001900.1 + 17679 0.68 0.45697
Target:  5'- aGGCuguUGGcCUGCG-GCGCAUGGCg -3'
miRNA:   3'- gCCGcu-ACUaGGCGCuCGUGUACCGa -5'
7199 5' -56.8 NC_001900.1 + 28317 0.68 0.45697
Target:  5'- cCGGCGAcacGUCagCGUGAGCugGUGGUUc -3'
miRNA:   3'- -GCCGCUac-UAG--GCGCUCGugUACCGA- -5'
7199 5' -56.8 NC_001900.1 + 8703 0.69 0.42771
Target:  5'- gCGGCGAagUGccCCGCGAGUuCGUGGaCg -3'
miRNA:   3'- -GCCGCU--ACuaGGCGCUCGuGUACC-Ga -5'
7199 5' -56.8 NC_001900.1 + 20196 0.69 0.424845
Target:  5'- aGGUGcUGAcccacaagucguucUCUGCguucGAGCACAUGGCUc -3'
miRNA:   3'- gCCGCuACU--------------AGGCG----CUCGUGUACCGA- -5'
7199 5' -56.8 NC_001900.1 + 41785 0.69 0.399588
Target:  5'- gGGCGAUGG-CUGCGguGGCG-AUGGCUu -3'
miRNA:   3'- gCCGCUACUaGGCGC--UCGUgUACCGA- -5'
7199 5' -56.8 NC_001900.1 + 32780 0.7 0.372675
Target:  5'- uCGuaGAUG-UCCGCGAGCGCGUaccGGUc -3'
miRNA:   3'- -GCcgCUACuAGGCGCUCGUGUA---CCGa -5'
7199 5' -56.8 NC_001900.1 + 23295 0.72 0.270854
Target:  5'- aCGGCGAgacgaUGAagcUCCGCGuGCGCcggGGCg -3'
miRNA:   3'- -GCCGCU-----ACU---AGGCGCuCGUGua-CCGa -5'
7199 5' -56.8 NC_001900.1 + 23414 1.08 0.00068
Target:  5'- gCGGCGAUGAUCCGCGAGCACAUGGCUg -3'
miRNA:   3'- -GCCGCUACUAGGCGCUCGUGUACCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.