miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7200 5' -58.5 NC_001900.1 + 20895 0.66 0.494805
Target:  5'- cGCCgaggCGCUGcUGGagaACCAAGGG-CUCa -3'
miRNA:   3'- -UGGa---GCGACcGCCg--UGGUUCCUaGAG- -5'
7200 5' -58.5 NC_001900.1 + 35218 0.66 0.494805
Target:  5'- cACCg-GCUGGUaccgggcuccGGUAUCGAGGAggCUCa -3'
miRNA:   3'- -UGGagCGACCG----------CCGUGGUUCCUa-GAG- -5'
7200 5' -58.5 NC_001900.1 + 1241 0.66 0.48455
Target:  5'- -aCUCGgUGGCGGCGgCAGcGGAgCUg -3'
miRNA:   3'- ugGAGCgACCGCCGUgGUU-CCUaGAg -5'
7200 5' -58.5 NC_001900.1 + 28330 0.66 0.464353
Target:  5'- aGCgUgaGCUGGUGGUucUCAAGGAUCUg -3'
miRNA:   3'- -UGgAg-CGACCGCCGu-GGUUCCUAGAg -5'
7200 5' -58.5 NC_001900.1 + 30912 0.66 0.464353
Target:  5'- uCCUCGaugGGCaGCACCcAGGAUUcgUCu -3'
miRNA:   3'- uGGAGCga-CCGcCGUGGuUCCUAG--AG- -5'
7200 5' -58.5 NC_001900.1 + 31306 0.66 0.464353
Target:  5'- cGCCUgcaGCgcaGUGGUaagcgcaguGCCGAGGGUCUCa -3'
miRNA:   3'- -UGGAg--CGac-CGCCG---------UGGUUCCUAGAG- -5'
7200 5' -58.5 NC_001900.1 + 44402 0.67 0.444605
Target:  5'- aGCUcgaUCGCUGGC-GUACCGuccGGGGUCa- -3'
miRNA:   3'- -UGG---AGCGACCGcCGUGGU---UCCUAGag -5'
7200 5' -58.5 NC_001900.1 + 17022 0.67 0.425336
Target:  5'- aACCUCGCcaacGGCcGCuACCAAGGugCUCa -3'
miRNA:   3'- -UGGAGCGa---CCGcCG-UGGUUCCuaGAG- -5'
7200 5' -58.5 NC_001900.1 + 15973 0.68 0.388338
Target:  5'- aACCUgGgUGGCGGCAgCAAGccGAaCUCc -3'
miRNA:   3'- -UGGAgCgACCGCCGUgGUUC--CUaGAG- -5'
7200 5' -58.5 NC_001900.1 + 24723 0.68 0.353518
Target:  5'- cAUCggCGCUGGUGGUACCGcAGGGcCUg -3'
miRNA:   3'- -UGGa-GCGACCGCCGUGGU-UCCUaGAg -5'
7200 5' -58.5 NC_001900.1 + 23596 0.69 0.340222
Target:  5'- aGCCaCGCUGGCGGCucaggccggugcgacGaCCAAGGAgCUg -3'
miRNA:   3'- -UGGaGCGACCGCCG---------------U-GGUUCCUaGAg -5'
7200 5' -58.5 NC_001900.1 + 39371 0.69 0.336142
Target:  5'- gUCUCGUUGGgGGUguagagcguggcaGCCu-GGAUCUCg -3'
miRNA:   3'- uGGAGCGACCgCCG-------------UGGuuCCUAGAG- -5'
7200 5' -58.5 NC_001900.1 + 46812 0.69 0.328888
Target:  5'- gACCUCGacCUGGCcgucacccGaGUACuCAAGGAUCUCc -3'
miRNA:   3'- -UGGAGC--GACCG--------C-CGUG-GUUCCUAGAG- -5'
7200 5' -58.5 NC_001900.1 + 26937 0.69 0.328887
Target:  5'- cACCgCGCUGGCGaGCugucagcgGCCAAcGGAguggCUCa -3'
miRNA:   3'- -UGGaGCGACCGC-CG--------UGGUU-CCUa---GAG- -5'
7200 5' -58.5 NC_001900.1 + 34805 0.69 0.320964
Target:  5'- cGCCuUCGCgGGCa-CACCGgcucAGGAUCUCg -3'
miRNA:   3'- -UGG-AGCGaCCGccGUGGU----UCCUAGAG- -5'
7200 5' -58.5 NC_001900.1 + 25057 0.7 0.262728
Target:  5'- gGCCgCGCUGGUaGCACCugugccgccguuGGGGAUCUg -3'
miRNA:   3'- -UGGaGCGACCGcCGUGG------------UUCCUAGAg -5'
7200 5' -58.5 NC_001900.1 + 35737 0.7 0.262728
Target:  5'- gGCCUcCGCUGGcCGuaGCCAGGGGUg-- -3'
miRNA:   3'- -UGGA-GCGACC-GCcgUGGUUCCUAgag -5'
7200 5' -58.5 NC_001900.1 + 8600 0.72 0.202351
Target:  5'- uCCUCGCUGaCGGUuuCCGcgucGGGGUCUCa -3'
miRNA:   3'- uGGAGCGACcGCCGu-GGU----UCCUAGAG- -5'
7200 5' -58.5 NC_001900.1 + 18558 0.74 0.138271
Target:  5'- uCCUCGCUGGUaucaGCACCAAGGAa--- -3'
miRNA:   3'- uGGAGCGACCGc---CGUGGUUCCUagag -5'
7200 5' -58.5 NC_001900.1 + 22896 1.09 0.000378
Target:  5'- gACCUCGCUGGCGGCACCAAGGAUCUCu -3'
miRNA:   3'- -UGGAGCGACCGCCGUGGUUCCUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.