Results 1 - 20 of 22 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 22154 | 1.08 | 0.000401 |
Target: 5'- aACUGAGGCUGAAGGCCAGACCGCCGAc -3' miRNA: 3'- -UGACUCCGACUUCCGGUCUGGCGGCU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 23847 | 0.79 | 0.063568 |
Target: 5'- cGCUGGGGCUGGgaAGGCCAGGCCcguaaCCGc -3' miRNA: 3'- -UGACUCCGACU--UCCGGUCUGGc----GGCu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 5961 | 0.72 | 0.183391 |
Target: 5'- gGCUGGcuGCUGAAccGGCCAGGCCGCa-- -3' miRNA: 3'- -UGACUc-CGACUU--CCGGUCUGGCGgcu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 38520 | 0.71 | 0.232442 |
Target: 5'- gGCgUGGGGUUGggGgaGCCugGGACCGUCGGg -3' miRNA: 3'- -UG-ACUCCGACuuC--CGG--UCUGGCGGCU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 235 | 0.7 | 0.256928 |
Target: 5'- --aGGGGCUGAAGGCCccuccuaAGAgCCGCUu- -3' miRNA: 3'- ugaCUCCGACUUCCGG-------UCU-GGCGGcu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 34861 | 0.7 | 0.270967 |
Target: 5'- --aGAGGCaccgGcccaGAGGCCGuGCCGCCGAa -3' miRNA: 3'- ugaCUCCGa---C----UUCCGGUcUGGCGGCU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 10177 | 0.69 | 0.314464 |
Target: 5'- cGCUGAGGCcaucAGGGCCgcagAGAgCCGCCuGAu -3' miRNA: 3'- -UGACUCCGac--UUCCGG----UCU-GGCGG-CU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 6447 | 0.68 | 0.346285 |
Target: 5'- cGCUGAGGCUG-AGGUCGaGCgCGUCa- -3' miRNA: 3'- -UGACUCCGACuUCCGGUcUG-GCGGcu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 33045 | 0.68 | 0.354593 |
Target: 5'- gACUGGuGCUGcuGGCCAccGCCGCCGc -3' miRNA: 3'- -UGACUcCGACuuCCGGUc-UGGCGGCu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 21957 | 0.67 | 0.407325 |
Target: 5'- -gUGAGGCUGGgcguGGGCCAcGuuGCCc- -3' miRNA: 3'- ugACUCCGACU----UCCGGUcUggCGGcu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 23601 | 0.67 | 0.41658 |
Target: 5'- cGCUGGcGGCUc-AGGCCGGugCGaCGAc -3' miRNA: 3'- -UGACU-CCGAcuUCCGGUCugGCgGCU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 47697 | 0.67 | 0.41658 |
Target: 5'- -gUGAGuGCUGGucgcGGGCgGcGACCGCCa- -3' miRNA: 3'- ugACUC-CGACU----UCCGgU-CUGGCGGcu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 7662 | 0.66 | 0.425962 |
Target: 5'- --gGGGGUUGggGGCgCAGGgCGUCa- -3' miRNA: 3'- ugaCUCCGACuuCCG-GUCUgGCGGcu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 20865 | 0.66 | 0.435469 |
Target: 5'- --cGAGGCcaacGAcaucgcacaAGGCCAGcUCGCCGAg -3' miRNA: 3'- ugaCUCCGa---CU---------UCCGGUCuGGCGGCU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 25162 | 0.66 | 0.435469 |
Target: 5'- cGCaGAGGCUc-GGGCCGGGuacgaggcgagcCUGCCGAc -3' miRNA: 3'- -UGaCUCCGAcuUCCGGUCU------------GGCGGCU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 17024 | 0.66 | 0.442196 |
Target: 5'- aGCcGAGaccaugaugcccgcGCUGGAagcGGCCaAGACCGCCGu -3' miRNA: 3'- -UGaCUC--------------CGACUU---CCGG-UCUGGCGGCu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 12721 | 0.66 | 0.444129 |
Target: 5'- -gUGAGGCcgcGAgcccguuccguucGGGCCGGAUCGUCGc -3' miRNA: 3'- ugACUCCGa--CU-------------UCCGGUCUGGCGGCu -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 28457 | 0.66 | 0.454843 |
Target: 5'- uGCUGGGGUUGAAgcucGGCCccauccacucccAGAuguCCGUCGGa -3' miRNA: 3'- -UGACUCCGACUU----CCGG------------UCU---GGCGGCU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 42520 | 0.66 | 0.464704 |
Target: 5'- gGCU--GGCUGuAGGCCGGuuggauGCCGuuGAg -3' miRNA: 3'- -UGAcuCCGACuUCCGGUC------UGGCggCU- -5' |
|||||||
7202 | 3' | -59.2 | NC_001900.1 | + | 27570 | 0.66 | 0.474675 |
Target: 5'- uCUG-GGCUGcgauGGCCGcGAaCGCCGAg -3' miRNA: 3'- uGACuCCGACuu--CCGGU-CUgGCGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home