miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7202 5' -54.9 NC_001900.1 + 28018 0.66 0.675124
Target:  5'- gUUCgGGCCGgUGUaACCg--GGUGCGg -3'
miRNA:   3'- -AAGgCCGGCaACGcUGGaauUCACGC- -5'
7202 5' -54.9 NC_001900.1 + 40321 0.67 0.607832
Target:  5'- cUgCGGCCGUgguUGGCCgcgucGAGUGCGa -3'
miRNA:   3'- aAgGCCGGCAac-GCUGGaa---UUCACGC- -5'
7202 5' -54.9 NC_001900.1 + 35107 0.68 0.57434
Target:  5'- -aCCGGaCUGguugGCGACCUggaagcGUGCGa -3'
miRNA:   3'- aaGGCC-GGCaa--CGCUGGAauu---CACGC- -5'
7202 5' -54.9 NC_001900.1 + 18665 0.69 0.508901
Target:  5'- -gCCGGCCG-UGCGGCgCUgcAG-GCGc -3'
miRNA:   3'- aaGGCCGGCaACGCUG-GAauUCaCGC- -5'
7202 5' -54.9 NC_001900.1 + 41933 0.77 0.164664
Target:  5'- aUCCGGCCGaugGCGACCUcguaUucGUGCa -3'
miRNA:   3'- aAGGCCGGCaa-CGCUGGA----AuuCACGc -5'
7202 5' -54.9 NC_001900.1 + 22189 1.07 0.001165
Target:  5'- gUUCCGGCCGUUGCGACCUUAAGUGCGa -3'
miRNA:   3'- -AAGGCCGGCAACGCUGGAAUUCACGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.