miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7203 3' -60.3 NC_001900.1 + 19822 0.66 0.431734
Target:  5'- gAGGGUgGCucGUCGCCGUCGgaugaccuucgaCGCGGa -3'
miRNA:   3'- gUCCCGgUGc-CAGCGGUAGCa-----------GCGCU- -5'
7203 3' -60.3 NC_001900.1 + 33798 0.66 0.424317
Target:  5'- --cGGCCACGGccUCGaCCAagguguccuUCGUCGgGAu -3'
miRNA:   3'- gucCCGGUGCC--AGC-GGU---------AGCAGCgCU- -5'
7203 3' -60.3 NC_001900.1 + 36586 0.67 0.393667
Target:  5'- -cGGGCUGuCGGUgccgugcaucgccgCGCCGUCGaacgccaUCGCGAa -3'
miRNA:   3'- guCCCGGU-GCCA--------------GCGGUAGC-------AGCGCU- -5'
7203 3' -60.3 NC_001900.1 + 23813 0.67 0.379748
Target:  5'- -cGGGCUcCGGUCgGCUAUCGgCGCu- -3'
miRNA:   3'- guCCCGGuGCCAG-CGGUAGCaGCGcu -5'
7203 3' -60.3 NC_001900.1 + 45117 0.67 0.354554
Target:  5'- --cGGCCGCGuUCGCCGUgGagGCGGg -3'
miRNA:   3'- gucCCGGUGCcAGCGGUAgCagCGCU- -5'
7203 3' -60.3 NC_001900.1 + 37077 0.68 0.346422
Target:  5'- ---cGCCACGGUgGCCGUgCGUCGaGAu -3'
miRNA:   3'- guccCGGUGCCAgCGGUA-GCAGCgCU- -5'
7203 3' -60.3 NC_001900.1 + 48678 0.68 0.330562
Target:  5'- -cGGGCUgucgucacGCuGUCGCUGUCGUCGCc- -3'
miRNA:   3'- guCCCGG--------UGcCAGCGGUAGCAGCGcu -5'
7203 3' -60.3 NC_001900.1 + 46928 0.68 0.322835
Target:  5'- -cGGGCCAC-GUCuaCGUUGUCGgGAu -3'
miRNA:   3'- guCCCGGUGcCAGcgGUAGCAGCgCU- -5'
7203 3' -60.3 NC_001900.1 + 36674 0.68 0.32207
Target:  5'- gCGGGGUUggcacggACGGUcuccgcagaCGCCAcgaagaUCGUCGCGAu -3'
miRNA:   3'- -GUCCCGG-------UGCCA---------GCGGU------AGCAGCGCU- -5'
7203 3' -60.3 NC_001900.1 + 46346 0.69 0.300467
Target:  5'- -cGGGUUGCcG-CGCCAgUCGUCGCGAa -3'
miRNA:   3'- guCCCGGUGcCaGCGGU-AGCAGCGCU- -5'
7203 3' -60.3 NC_001900.1 + 3506 0.7 0.22872
Target:  5'- gCAGGGUCuggcCGGUgacauccaggaCGCCAUCGaCGCGGc -3'
miRNA:   3'- -GUCCCGGu---GCCA-----------GCGGUAGCaGCGCU- -5'
7203 3' -60.3 NC_001900.1 + 19262 0.73 0.142772
Target:  5'- gCAGGGaCCACGGUC-CUggCuGUCGCGAg -3'
miRNA:   3'- -GUCCC-GGUGCCAGcGGuaG-CAGCGCU- -5'
7203 3' -60.3 NC_001900.1 + 11046 0.73 0.142772
Target:  5'- -uGGGCgAgGGUCGCCAcCGggCGCGAa -3'
miRNA:   3'- guCCCGgUgCCAGCGGUaGCa-GCGCU- -5'
7203 3' -60.3 NC_001900.1 + 859 0.75 0.108861
Target:  5'- gGGGGCCACGGUCGCgAUCagcUCGaUGGg -3'
miRNA:   3'- gUCCCGGUGCCAGCGgUAGc--AGC-GCU- -5'
7203 3' -60.3 NC_001900.1 + 22043 1.07 0.000414
Target:  5'- uCAGGGCCACGGUCGCCAUCGUCGCGAc -3'
miRNA:   3'- -GUCCCGGUGCCAGCGGUAGCAGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.