miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7203 5' -55 NC_001900.1 + 9857 0.65 0.742657
Target:  5'- gCUUCgGUCGAUGAcCGAcGCGGcGGCUc- -3'
miRNA:   3'- -GGAGgCAGCUAUU-GCU-CGCC-CUGGua -5'
7203 5' -55 NC_001900.1 + 6823 0.66 0.732124
Target:  5'- aCUUCG-CGAUGGCGGGUuacucgcaGGGAgCCAUc -3'
miRNA:   3'- gGAGGCaGCUAUUGCUCG--------CCCU-GGUA- -5'
7203 5' -55 NC_001900.1 + 6024 0.66 0.693453
Target:  5'- aCCUCCG-CGAgcuggAGCGAGUuguccgcgccgccaaGGGACUu- -3'
miRNA:   3'- -GGAGGCaGCUa----UUGCUCG---------------CCCUGGua -5'
7203 5' -55 NC_001900.1 + 42967 0.66 0.689099
Target:  5'- gCCUCCGUCGAggggGACGcgaAGCcucGcGGCCGUc -3'
miRNA:   3'- -GGAGGCAGCUa---UUGC---UCGc--C-CUGGUA- -5'
7203 5' -55 NC_001900.1 + 14479 0.67 0.678177
Target:  5'- aUCUCCGUCGAggugGACGAuGCGuucuGGAgCCu- -3'
miRNA:   3'- -GGAGGCAGCUa---UUGCU-CGC----CCU-GGua -5'
7203 5' -55 NC_001900.1 + 30591 0.67 0.656212
Target:  5'- gCCUUC-UCGAUGACGGGCuGGAaCCc- -3'
miRNA:   3'- -GGAGGcAGCUAUUGCUCGcCCU-GGua -5'
7203 5' -55 NC_001900.1 + 47689 0.68 0.623121
Target:  5'- -aUCCGaCGGUGagugcuggucGCGGGCGGcGACCGc -3'
miRNA:   3'- ggAGGCaGCUAU----------UGCUCGCC-CUGGUa -5'
7203 5' -55 NC_001900.1 + 41978 0.68 0.612094
Target:  5'- gCCgUCCGacUCGcgAugGAGCGugaGGACCAUc -3'
miRNA:   3'- -GG-AGGC--AGCuaUugCUCGC---CCUGGUA- -5'
7203 5' -55 NC_001900.1 + 37264 0.68 0.612094
Target:  5'- gCCgacagggCCGUCGuacACGgcccgcAGCGGGGCCAg -3'
miRNA:   3'- -GGa------GGCAGCuauUGC------UCGCCCUGGUa -5'
7203 5' -55 NC_001900.1 + 22924 0.68 0.590101
Target:  5'- gCUCUGgucaaCGGUcuGACGAGCgcccuGGGACCGUg -3'
miRNA:   3'- gGAGGCa----GCUA--UUGCUCG-----CCCUGGUA- -5'
7203 5' -55 NC_001900.1 + 20309 0.69 0.547683
Target:  5'- uCCUCaaCGUCGAgaagcaaggcgcucgAugGAGCGGGAUgAUg -3'
miRNA:   3'- -GGAG--GCAGCUa--------------UugCUCGCCCUGgUA- -5'
7203 5' -55 NC_001900.1 + 15998 0.73 0.311777
Target:  5'- aCUCCGguggcggCGGUAGCGgcGGCGGuGGCCAg -3'
miRNA:   3'- gGAGGCa------GCUAUUGC--UCGCC-CUGGUa -5'
7203 5' -55 NC_001900.1 + 22077 1.07 0.001452
Target:  5'- gCCUCCGUCGAUAACGAGCGGGACCAUc -3'
miRNA:   3'- -GGAGGCAGCUAUUGCUCGCCCUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.