Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7203 | 5' | -55 | NC_001900.1 | + | 9857 | 0.65 | 0.742657 |
Target: 5'- gCUUCgGUCGAUGAcCGAcGCGGcGGCUc- -3' miRNA: 3'- -GGAGgCAGCUAUU-GCU-CGCC-CUGGua -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 6823 | 0.66 | 0.732124 |
Target: 5'- aCUUCG-CGAUGGCGGGUuacucgcaGGGAgCCAUc -3' miRNA: 3'- gGAGGCaGCUAUUGCUCG--------CCCU-GGUA- -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 6024 | 0.66 | 0.693453 |
Target: 5'- aCCUCCG-CGAgcuggAGCGAGUuguccgcgccgccaaGGGACUu- -3' miRNA: 3'- -GGAGGCaGCUa----UUGCUCG---------------CCCUGGua -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 42967 | 0.66 | 0.689099 |
Target: 5'- gCCUCCGUCGAggggGACGcgaAGCcucGcGGCCGUc -3' miRNA: 3'- -GGAGGCAGCUa---UUGC---UCGc--C-CUGGUA- -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 14479 | 0.67 | 0.678177 |
Target: 5'- aUCUCCGUCGAggugGACGAuGCGuucuGGAgCCu- -3' miRNA: 3'- -GGAGGCAGCUa---UUGCU-CGC----CCU-GGua -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 30591 | 0.67 | 0.656212 |
Target: 5'- gCCUUC-UCGAUGACGGGCuGGAaCCc- -3' miRNA: 3'- -GGAGGcAGCUAUUGCUCGcCCU-GGua -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 47689 | 0.68 | 0.623121 |
Target: 5'- -aUCCGaCGGUGagugcuggucGCGGGCGGcGACCGc -3' miRNA: 3'- ggAGGCaGCUAU----------UGCUCGCC-CUGGUa -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 41978 | 0.68 | 0.612094 |
Target: 5'- gCCgUCCGacUCGcgAugGAGCGugaGGACCAUc -3' miRNA: 3'- -GG-AGGC--AGCuaUugCUCGC---CCUGGUA- -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 37264 | 0.68 | 0.612094 |
Target: 5'- gCCgacagggCCGUCGuacACGgcccgcAGCGGGGCCAg -3' miRNA: 3'- -GGa------GGCAGCuauUGC------UCGCCCUGGUa -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 22924 | 0.68 | 0.590101 |
Target: 5'- gCUCUGgucaaCGGUcuGACGAGCgcccuGGGACCGUg -3' miRNA: 3'- gGAGGCa----GCUA--UUGCUCG-----CCCUGGUA- -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 20309 | 0.69 | 0.547683 |
Target: 5'- uCCUCaaCGUCGAgaagcaaggcgcucgAugGAGCGGGAUgAUg -3' miRNA: 3'- -GGAG--GCAGCUa--------------UugCUCGCCCUGgUA- -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 15998 | 0.73 | 0.311777 |
Target: 5'- aCUCCGguggcggCGGUAGCGgcGGCGGuGGCCAg -3' miRNA: 3'- gGAGGCa------GCUAUUGC--UCGCC-CUGGUa -5' |
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7203 | 5' | -55 | NC_001900.1 | + | 22077 | 1.07 | 0.001452 |
Target: 5'- gCCUCCGUCGAUAACGAGCGGGACCAUc -3' miRNA: 3'- -GGAGGCAGCUAUUGCUCGCCCUGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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