Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7204 | 3' | -59.9 | NC_001900.1 | + | 21943 | 0.98 | 0.001981 |
Target: 5'- cAUCGCGAUGAG-CCGUGAGGCUGGGCg -3' miRNA: 3'- -UAGCGCUACUCgGGCACUCCGACCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 10494 | 0.75 | 0.095664 |
Target: 5'- -cCGCGAUGGGCCuCGgccuGCUGGGCa -3' miRNA: 3'- uaGCGCUACUCGG-GCacucCGACCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 14056 | 0.73 | 0.141024 |
Target: 5'- uUCGUGAUcGAGgacuCCCGcGAgGGCUGGGCa -3' miRNA: 3'- uAGCGCUA-CUC----GGGCaCU-CCGACCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 4473 | 0.71 | 0.193235 |
Target: 5'- uUgGCGggGAGCaCCcacccaguucccuuGUGGGGCUGGGUc -3' miRNA: 3'- uAgCGCuaCUCG-GG--------------CACUCCGACCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 4184 | 0.71 | 0.199983 |
Target: 5'- cAUCGCugGAUGAGaUCCGaGAGGUcgUGGGCu -3' miRNA: 3'- -UAGCG--CUACUC-GGGCaCUCCG--ACCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 19282 | 0.69 | 0.272374 |
Target: 5'- uGUCGCGA-GAcUCCGUGuGGCguaaggcaUGGGCg -3' miRNA: 3'- -UAGCGCUaCUcGGGCACuCCG--------ACCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 28006 | 0.69 | 0.279273 |
Target: 5'- -aCGUGcgGAGCCCuc-GGGCUGGuGCc -3' miRNA: 3'- uaGCGCuaCUCGGGcacUCCGACC-CG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 38502 | 0.68 | 0.300801 |
Target: 5'- gGUUGUGGcuuggGAGCUggCGUGGGGUUGGGg -3' miRNA: 3'- -UAGCGCUa----CUCGG--GCACUCCGACCCg -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 28037 | 0.67 | 0.342727 |
Target: 5'- --gGUGcgGAGCcgccaccgucacaggCCGUGAGGCccaGGGCg -3' miRNA: 3'- uagCGCuaCUCG---------------GGCACUCCGa--CCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 39303 | 0.66 | 0.399459 |
Target: 5'- -cCGCGccGAGCCCGUGGGGgUc-GCu -3' miRNA: 3'- uaGCGCuaCUCGGGCACUCCgAccCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 37401 | 0.66 | 0.408563 |
Target: 5'- gGUCGcCGAUGuggacgacCUCGUcGGGCUGGGUg -3' miRNA: 3'- -UAGC-GCUACuc------GGGCAcUCCGACCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 23315 | 0.66 | 0.417796 |
Target: 5'- --gGCGGUcGGCCCc---GGCUGGGCc -3' miRNA: 3'- uagCGCUAcUCGGGcacuCCGACCCG- -5' |
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7204 | 3' | -59.9 | NC_001900.1 | + | 41987 | 0.66 | 0.436638 |
Target: 5'- cUCGCGAUG-GagCGUGAGGaccaucucGGGCa -3' miRNA: 3'- uAGCGCUACuCggGCACUCCga------CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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