miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7204 5' -58.1 NC_001900.1 + 1373 0.68 0.407823
Target:  5'- -cGCCCGCGACCaGCAcUCAcCGuCGGa -3'
miRNA:   3'- aaCGGGCGCUGGcUGU-AGUcGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 1778 0.67 0.445758
Target:  5'- -gGUgCGUGACCGGgucacugugacCAUCGGCGACu- -3'
miRNA:   3'- aaCGgGCGCUGGCU-----------GUAGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 2263 0.67 0.455547
Target:  5'- -gGCCa--GGUCGAgGUCAGCGACGAg -3'
miRNA:   3'- aaCGGgcgCUGGCUgUAGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 3349 0.67 0.469443
Target:  5'- -gGCCUGCGGgCGACcuguUCcucgaacuggagaccGGCGGCGAg -3'
miRNA:   3'- aaCGGGCGCUgGCUGu---AG---------------UCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 9028 0.82 0.047345
Target:  5'- -aGgCCGUGACCGACAucgUCGGCGACGGc -3'
miRNA:   3'- aaCgGGCGCUGGCUGU---AGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 11659 0.67 0.436088
Target:  5'- -aGCCCGaCGAggUCGuccACAUCGGCGACc- -3'
miRNA:   3'- aaCGGGC-GCU--GGC---UGUAGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 12758 0.66 0.516533
Target:  5'- -cGCCCGU--CCGACcauccUCAGCGACc- -3'
miRNA:   3'- aaCGGGCGcuGGCUGu----AGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 13000 0.67 0.46545
Target:  5'- -cGCUC-UGACCaacGugGUCAGCGGCGGc -3'
miRNA:   3'- aaCGGGcGCUGG---CugUAGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 13162 0.66 0.495806
Target:  5'- -cGCCCaGCGcCUGAUcgCGGCuGGCGGu -3'
miRNA:   3'- aaCGGG-CGCuGGCUGuaGUCG-CUGCU- -5'
7204 5' -58.1 NC_001900.1 + 13760 0.7 0.299465
Target:  5'- cUGCCCGCuGGUCGACAUCugugGGCGuCGGg -3'
miRNA:   3'- aACGGGCG-CUGGCUGUAG----UCGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 14500 0.67 0.445758
Target:  5'- cUGaCCCGa-GCCGcCAUCGGCGGCa- -3'
miRNA:   3'- aAC-GGGCgcUGGCuGUAGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 17568 0.75 0.147357
Target:  5'- aUGCCCGCG-CUGACuUCGGUGuCGAg -3'
miRNA:   3'- aACGGGCGCuGGCUGuAGUCGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 19069 0.69 0.363352
Target:  5'- cUGCCCGCGuCCGACuggaCGGUGcguCGGu -3'
miRNA:   3'- aACGGGCGCuGGCUGua--GUCGCu--GCU- -5'
7204 5' -58.1 NC_001900.1 + 21083 0.66 0.537599
Target:  5'- gUGCCCGCcggGGgCGGCGUCAacGUGcCGAu -3'
miRNA:   3'- aACGGGCG---CUgGCUGUAGU--CGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 21978 1.06 0.000669
Target:  5'- gUUGCCCGCGACCGACAUCAGCGACGAg -3'
miRNA:   3'- -AACGGGCGCUGGCUGUAGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 22257 0.67 0.436088
Target:  5'- -gGCCCaGCGaugGCCGAgGUCguggAGUGACGGa -3'
miRNA:   3'- aaCGGG-CGC---UGGCUgUAG----UCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 23321 0.69 0.346529
Target:  5'- -cGCCggggCGCGGCCcGCGUCGGCGA-GAa -3'
miRNA:   3'- aaCGG----GCGCUGGcUGUAGUCGCUgCU- -5'
7204 5' -58.1 NC_001900.1 + 23388 0.7 0.322356
Target:  5'- -gGCCgGUGACCGugccgccucACGUC-GCGGCGAu -3'
miRNA:   3'- aaCGGgCGCUGGC---------UGUAGuCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 23590 0.66 0.527027
Target:  5'- -cGCCUaCGGUCGGCAUCAcCGACGGg -3'
miRNA:   3'- aaCGGGcGCUGGCUGUAGUcGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 24034 0.66 0.537599
Target:  5'- -aGCCCGCG-CCaACcUCGGUGcCGAg -3'
miRNA:   3'- aaCGGGCGCuGGcUGuAGUCGCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.