miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7204 5' -58.1 NC_001900.1 + 32162 0.67 0.42654
Target:  5'- -aGCCgacaaGCGGCgCGGCGaUGGCGACGAu -3'
miRNA:   3'- aaCGGg----CGCUG-GCUGUaGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 43305 0.67 0.425592
Target:  5'- -cGCCCacaGCGAgggccagguuguaCCGGCGUCGGCGGucauCGAg -3'
miRNA:   3'- aaCGGG---CGCU-------------GGCUGUAGUCGCU----GCU- -5'
7204 5' -58.1 NC_001900.1 + 1373 0.68 0.407823
Target:  5'- -cGCCCGCGACCaGCAcUCAcCGuCGGa -3'
miRNA:   3'- aaCGGGCGCUGGcUGU-AGUcGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 36773 0.68 0.407823
Target:  5'- gUGgCCGuCGACCGAgaAUCGGCcuccGACGAu -3'
miRNA:   3'- aACgGGC-GCUGGCUg-UAGUCG----CUGCU- -5'
7204 5' -58.1 NC_001900.1 + 31327 0.68 0.407823
Target:  5'- -cGCCCGUguaccgGACgguguucucuuCGACAUCGGCGACc- -3'
miRNA:   3'- aaCGGGCG------CUG-----------GCUGUAGUCGCUGcu -5'
7204 5' -58.1 NC_001900.1 + 19069 0.69 0.363352
Target:  5'- cUGCCCGCGuCCGACuggaCGGUGcguCGGu -3'
miRNA:   3'- aACGGGCGCuGGCUGua--GUCGCu--GCU- -5'
7204 5' -58.1 NC_001900.1 + 23321 0.69 0.346529
Target:  5'- -cGCCggggCGCGGCCcGCGUCGGCGA-GAa -3'
miRNA:   3'- aaCGG----GCGCUGGcUGUAGUCGCUgCU- -5'
7204 5' -58.1 NC_001900.1 + 38903 0.69 0.33833
Target:  5'- -gGCCUcaGCGgagGCCgGAUGUCAGCGGCGGu -3'
miRNA:   3'- aaCGGG--CGC---UGG-CUGUAGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 29479 0.7 0.322356
Target:  5'- cUGCUCGCGGCCGACcuugauccgCAGCGuCu- -3'
miRNA:   3'- aACGGGCGCUGGCUGua-------GUCGCuGcu -5'
7204 5' -58.1 NC_001900.1 + 23388 0.7 0.322356
Target:  5'- -gGCCgGUGACCGugccgccucACGUC-GCGGCGAu -3'
miRNA:   3'- aaCGGgCGCUGGC---------UGUAGuCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 38536 0.7 0.314584
Target:  5'- -aGCCUGgGACCGucGgGUCGGCGuCGAc -3'
miRNA:   3'- aaCGGGCgCUGGC--UgUAGUCGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 13760 0.7 0.299465
Target:  5'- cUGCCCGCuGGUCGACAUCugugGGCGuCGGg -3'
miRNA:   3'- aACGGGCG-CUGGCUGUAG----UCGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 32249 0.71 0.244622
Target:  5'- gUUGCCCGUGA-CGAcCAUCGGCGAg-- -3'
miRNA:   3'- -AACGGGCGCUgGCU-GUAGUCGCUgcu -5'
7204 5' -58.1 NC_001900.1 + 29957 0.75 0.147357
Target:  5'- -gGCCaugaCGUGACCGGgGUCAGCGAgGAa -3'
miRNA:   3'- aaCGG----GCGCUGGCUgUAGUCGCUgCU- -5'
7204 5' -58.1 NC_001900.1 + 17568 0.75 0.147357
Target:  5'- aUGCCCGCG-CUGACuUCGGUGuCGAg -3'
miRNA:   3'- aACGGGCGCuGGCUGuAGUCGCuGCU- -5'
7204 5' -58.1 NC_001900.1 + 9028 0.82 0.047345
Target:  5'- -aGgCCGUGACCGACAucgUCGGCGACGGc -3'
miRNA:   3'- aaCgGGCGCUGGCUGU---AGUCGCUGCU- -5'
7204 5' -58.1 NC_001900.1 + 21978 1.06 0.000669
Target:  5'- gUUGCCCGCGACCGACAUCAGCGACGAg -3'
miRNA:   3'- -AACGGGCGCUGGCUGUAGUCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.