Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7206 | 3' | -58.7 | NC_001900.1 | + | 31078 | 0.67 | 0.496147 |
Target: 5'- aACGACGUUGauggUGACGAGGUC-UCCu -3' miRNA: 3'- gUGCUGCGAUg---GCUGCUCCGGcAGGc -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 3762 | 0.72 | 0.255466 |
Target: 5'- uCGCGGCGCUcguUCGAUGAGGUCGgcgUCGu -3' miRNA: 3'- -GUGCUGCGAu--GGCUGCUCCGGCa--GGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 609 | 0.7 | 0.318343 |
Target: 5'- -uUGACGaCUACCGAuuCGAGaCCGUCUGg -3' miRNA: 3'- guGCUGC-GAUGGCU--GCUCcGGCAGGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 33294 | 0.69 | 0.366354 |
Target: 5'- gACaACGCgucgGCCGGCGcAGGCCGcaccUCCa -3' miRNA: 3'- gUGcUGCGa---UGGCUGC-UCCGGC----AGGc -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 25730 | 0.68 | 0.392163 |
Target: 5'- gACGACGaucuucucGCCGACGcGGGCCGcgccCCGg -3' miRNA: 3'- gUGCUGCga------UGGCUGC-UCCGGCa---GGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 6731 | 0.68 | 0.419126 |
Target: 5'- uGCGGC-CUucCCGAUGuGGCCGUCgGu -3' miRNA: 3'- gUGCUGcGAu-GGCUGCuCCGGCAGgC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 35764 | 0.68 | 0.437714 |
Target: 5'- aAC-ACGCcGCCGACGuacugcuccAGGUCGUCCu -3' miRNA: 3'- gUGcUGCGaUGGCUGC---------UCCGGCAGGc -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 29959 | 0.67 | 0.47527 |
Target: 5'- cCAUGACGUgACCGgggucaGCGAGGaagcaccgacgcaCCGUCCa -3' miRNA: 3'- -GUGCUGCGaUGGC------UGCUCC-------------GGCAGGc -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 959 | 0.67 | 0.476254 |
Target: 5'- cCGCGACuGCUGCUGGCcuacGGCCGgCUGc -3' miRNA: 3'- -GUGCUG-CGAUGGCUGcu--CCGGCaGGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 34861 | 0.67 | 0.486152 |
Target: 5'- --aGAgGC-ACCGGCccaGAGGCCGUgCCGc -3' miRNA: 3'- gugCUgCGaUGGCUG---CUCCGGCA-GGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 31199 | 0.67 | 0.496147 |
Target: 5'- gACGAUuggGCCGACGAccuccuucuuGGCCGUgCCGu -3' miRNA: 3'- gUGCUGcgaUGGCUGCU----------CCGGCA-GGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 9272 | 0.66 | 0.54739 |
Target: 5'- cUACGAgGCUgagcGCCGACcaGAGGCCaUCgGc -3' miRNA: 3'- -GUGCUgCGA----UGGCUG--CUCCGGcAGgC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 36057 | 0.67 | 0.496147 |
Target: 5'- gAUGGCGUgcuUGCUGcCaGGGCCGUCCu -3' miRNA: 3'- gUGCUGCG---AUGGCuGcUCCGGCAGGc -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 2462 | 0.71 | 0.282067 |
Target: 5'- cCACGACGCguaCGACGAcgGGCUGaccuUCCGu -3' miRNA: 3'- -GUGCUGCGaugGCUGCU--CCGGC----AGGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 27192 | 0.66 | 0.536991 |
Target: 5'- gACGACG-UGCUGuCGcGGGUCGUUCGg -3' miRNA: 3'- gUGCUGCgAUGGCuGC-UCCGGCAGGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 45118 | 0.67 | 0.486152 |
Target: 5'- gGCcGCGUUcGCCGugGAGGCgGguaCCGg -3' miRNA: 3'- gUGcUGCGA-UGGCugCUCCGgCa--GGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 9911 | 0.67 | 0.486152 |
Target: 5'- aGCGAuCGaCUACCuGCGuaagcccccGGCCGUCCa -3' miRNA: 3'- gUGCU-GC-GAUGGcUGCu--------CCGGCAGGc -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 5581 | 0.7 | 0.333805 |
Target: 5'- gGCGGCGC-ACCGAgcuGGCCGgCCGa -3' miRNA: 3'- gUGCUGCGaUGGCUgcuCCGGCaGGC- -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 15877 | 0.71 | 0.282067 |
Target: 5'- cCugGGCGUUGaucCCGACGAGGuuG-CCa -3' miRNA: 3'- -GugCUGCGAU---GGCUGCUCCggCaGGc -5' |
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7206 | 3' | -58.7 | NC_001900.1 | + | 20832 | 1.07 | 0.000677 |
Target: 5'- gCACGACGCUACCGACGAGGCCGUCCGc -3' miRNA: 3'- -GUGCUGCGAUGGCUGCUCCGGCAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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