miRNA: 3'- -GUGCUGCGaugGCUGCU--CCGGC----AGGC- -5'
miRNA: 3'- -GugCUGCGAU---GGCUGCUCCggCaGGc -5'
miRNA: 3'- -GUGCUGCGAu--GGCUGCUCCGGCa--GGC- -5'
miRNA: 3'- gUGCUG-----CGauGGCUGCUCCGGCAGGc -5'
miRNA: 3'- -GUGCUGCGAUGGCUGCUCCGGCAGGC- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7206 | 3' | -58.7 | NC_001900.1 | + | 2462 | 0.71 | 0.282067 |
|
Target: 5'- cCACGACGCguaCGACGAcgGGCUGaccuUCCGu -3' miRNA: 3'- -GUGCUGCGaugGCUGCU--CCGGC----AGGC- -5' |
|||||||
| 7206 | 3' | -58.7 | NC_001900.1 | + | 15877 | 0.71 | 0.282067 |
|
Target: 5'- cCugGGCGUUGaucCCGACGAGGuuG-CCa -3' miRNA: 3'- -GugCUGCGAU---GGCUGCUCCggCaGGc -5' |
|||||||
| 7206 | 3' | -58.7 | NC_001900.1 | + | 3762 | 0.72 | 0.255466 |
|
Target: 5'- uCGCGGCGCUcguUCGAUGAGGUCGgcgUCGu -3' miRNA: 3'- -GUGCUGCGAu--GGCUGCUCCGGCa--GGC- -5' |
|||||||
| 7206 | 3' | -58.7 | NC_001900.1 | + | 11649 | 0.74 | 0.164693 |
|
Target: 5'- gGCGACacccaGC--CCGACGAGGUCGUCCa -3' miRNA: 3'- gUGCUG-----CGauGGCUGCUCCGGCAGGc -5' |
|||||||
| 7206 | 3' | -58.7 | NC_001900.1 | + | 20832 | 1.07 | 0.000677 |
|
Target: 5'- gCACGACGCUACCGACGAGGCCGUCCGc -3' miRNA: 3'- -GUGCUGCGAUGGCUGCUCCGGCAGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home