miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7206 5' -54.1 NC_001900.1 + 18141 0.67 0.708499
Target:  5'- uGGCaGACuGCGUCgGCGCAgucgccgaguGGGUCGGCu -3'
miRNA:   3'- -CCGgUUGcUGUAG-CGUGU----------UCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 45824 0.67 0.708499
Target:  5'- aGGUCgAACGG-GUUGC-CGAGGUCGGCc -3'
miRNA:   3'- -CCGG-UUGCUgUAGCGuGUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 47583 0.67 0.697535
Target:  5'- aGGcCCAGCGACGUUucgucgGC-CGGGGgUGGCg -3'
miRNA:   3'- -CC-GGUUGCUGUAG------CGuGUUCCgGUCG- -5'
7206 5' -54.1 NC_001900.1 + 4365 0.67 0.697535
Target:  5'- cGGCCAGCGGCcUgGCugccGCAGGGgaCC-GCg -3'
miRNA:   3'- -CCGGUUGCUGuAgCG----UGUUCC--GGuCG- -5'
7206 5' -54.1 NC_001900.1 + 19437 0.67 0.695334
Target:  5'- cGCCAACGAgGcgaagCGCaacggguACAucaucaacccgauGGGCCGGCg -3'
miRNA:   3'- cCGGUUGCUgUa----GCG-------UGU-------------UCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 47463 0.67 0.686506
Target:  5'- cGGCCGAgaagcCGACcUCGaacaGCGAGGagauCCGGCc -3'
miRNA:   3'- -CCGGUU-----GCUGuAGCg---UGUUCC----GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 8504 0.67 0.686506
Target:  5'- aGGUCAGuCGGCA-CGCGCcacugcaugcguGAGGCCcagaaGGCu -3'
miRNA:   3'- -CCGGUU-GCUGUaGCGUG------------UUCCGG-----UCG- -5'
7206 5' -54.1 NC_001900.1 + 26235 0.67 0.686506
Target:  5'- uGGCacuCGccGCAgccuucuucUCGCGCucGGCCGGCg -3'
miRNA:   3'- -CCGguuGC--UGU---------AGCGUGuuCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 4736 0.67 0.686506
Target:  5'- gGGUCcACGACAUgugcCGCGCucGcGCUGGCa -3'
miRNA:   3'- -CCGGuUGCUGUA----GCGUGuuC-CGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 1586 0.67 0.686506
Target:  5'- gGGCCGGaucuCcUCGCuguuCGAGGUCGGCu -3'
miRNA:   3'- -CCGGUUgcu-GuAGCGu---GUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 2632 0.67 0.6854
Target:  5'- cGGCC-AUGAgG-CGCAgagguacCGAGGCCAGa -3'
miRNA:   3'- -CCGGuUGCUgUaGCGU-------GUUCCGGUCg -5'
7206 5' -54.1 NC_001900.1 + 16512 0.67 0.664298
Target:  5'- uGCUGGCguaGAgGUCGCACGgaucuccgucaAGGUCAGCc -3'
miRNA:   3'- cCGGUUG---CUgUAGCGUGU-----------UCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 2194 0.67 0.664298
Target:  5'- cGUCGacACGACGuUCGCcgaagGCAAGGCaCAGUu -3'
miRNA:   3'- cCGGU--UGCUGU-AGCG-----UGUUCCG-GUCG- -5'
7206 5' -54.1 NC_001900.1 + 6335 0.67 0.664298
Target:  5'- cGGCC-ACGGC--CGCuguCAAGGucaaCCAGCa -3'
miRNA:   3'- -CCGGuUGCUGuaGCGu--GUUCC----GGUCG- -5'
7206 5' -54.1 NC_001900.1 + 43830 0.68 0.653141
Target:  5'- cGCCGcuucUGGCGUCGgGaacGGCCAGCg -3'
miRNA:   3'- cCGGUu---GCUGUAGCgUguuCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 25857 0.68 0.653141
Target:  5'- uGGCaGACGAguucgacugaGUCGUACc-GGCCAGCu -3'
miRNA:   3'- -CCGgUUGCUg---------UAGCGUGuuCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 29956 0.68 0.653141
Target:  5'- aGGCC-AUGACGUgaC-CGGGGUCAGCg -3'
miRNA:   3'- -CCGGuUGCUGUAgcGuGUUCCGGUCG- -5'
7206 5' -54.1 NC_001900.1 + 7963 0.68 0.652025
Target:  5'- cGGCCggUGGC--CGCAuCGAGGCgcaaccuccucacCAGCa -3'
miRNA:   3'- -CCGGuuGCUGuaGCGU-GUUCCG-------------GUCG- -5'
7206 5' -54.1 NC_001900.1 + 39575 0.68 0.641965
Target:  5'- cGGCCGugGACGUaagCGUcgguguagcccaGCGGGGCCu-- -3'
miRNA:   3'- -CCGGUugCUGUA---GCG------------UGUUCCGGucg -5'
7206 5' -54.1 NC_001900.1 + 3472 0.68 0.641965
Target:  5'- cGGCCAucgacuacaACGACGUguccgagaaccCGCAgGgucuGGCCGGUg -3'
miRNA:   3'- -CCGGU---------UGCUGUA-----------GCGUgUu---CCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.