Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7207 | 3' | -55.4 | NC_001900.1 | + | 9562 | 0.66 | 0.708948 |
Target: 5'- gGGauCCGAacGUCCCGCUGauccGGGUGGa-- -3' miRNA: 3'- -CC--GGUU--UAGGGCGAUga--CCCACCagc -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 10491 | 0.66 | 0.708948 |
Target: 5'- aGGCCGcgaugggCCuCGgcCUGCUGGGcacgaUGGUCGa -3' miRNA: 3'- -CCGGUuua----GG-GC--GAUGACCC-----ACCAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 34950 | 0.66 | 0.676304 |
Target: 5'- uGGgCGAcaucAUCCCGgUAgUGGGUgucgaucaGGUCGa -3' miRNA: 3'- -CCgGUU----UAGGGCgAUgACCCA--------CCAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 19058 | 0.66 | 0.665324 |
Target: 5'- cGGCgCAGAcgcugCCCGCguccgACUGgacGGUGcGUCGg -3' miRNA: 3'- -CCG-GUUUa----GGGCGa----UGAC---CCAC-CAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 44461 | 0.66 | 0.654312 |
Target: 5'- aGUCAGAUCCCGUUGCcgcuUGGGUaucUCGc -3' miRNA: 3'- cCGGUUUAGGGCGAUG----ACCCAcc-AGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 43244 | 0.66 | 0.654312 |
Target: 5'- gGGCCAGcccagucucgGUCcuCCGCUACcuUGGcGUGGcCGa -3' miRNA: 3'- -CCGGUU----------UAG--GGCGAUG--ACC-CACCaGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 12744 | 0.68 | 0.588163 |
Target: 5'- cGUCAAGgaCgCGCUGCgGGGUGaGUCGa -3' miRNA: 3'- cCGGUUUa-GgGCGAUGaCCCAC-CAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 34177 | 0.68 | 0.588163 |
Target: 5'- cGCCAggAGUCCUgguagagggaGCUgaACUGGGUGG-CGc -3' miRNA: 3'- cCGGU--UUAGGG----------CGA--UGACCCACCaGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 14062 | 0.68 | 0.555463 |
Target: 5'- -aUCGAGgacUCCCGCgaggGCUGGGcagccgccuUGGUCGa -3' miRNA: 3'- ccGGUUU---AGGGCGa---UGACCC---------ACCAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 15805 | 0.69 | 0.491905 |
Target: 5'- gGGCCAGAaggCCCGCgaagccGUGGUCGa -3' miRNA: 3'- -CCGGUUUa--GGGCGaugaccCACCAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 10403 | 0.69 | 0.481628 |
Target: 5'- uGCCuggcGAUCCCG-UACaUGcGGUGGUCGc -3' miRNA: 3'- cCGGu---UUAGGGCgAUG-AC-CCACCAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 5596 | 0.7 | 0.461395 |
Target: 5'- uGGCCGgccGAUCCaugaCGCgg--GGGUGGUCa -3' miRNA: 3'- -CCGGU---UUAGG----GCGaugaCCCACCAGc -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 14697 | 0.7 | 0.460395 |
Target: 5'- cGCCAAcgCCCcgaagcugcacucGCUGCc-GGUGGUCGa -3' miRNA: 3'- cCGGUUuaGGG-------------CGAUGacCCACCAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 15957 | 0.7 | 0.441619 |
Target: 5'- uGGCCGAucaCUCGCcaacCUGGGUGG-CGg -3' miRNA: 3'- -CCGGUUua-GGGCGau--GACCCACCaGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 20101 | 0.71 | 0.41288 |
Target: 5'- gGGCCAAcaucAUCCCGUacCUGGGUcGG-CGc -3' miRNA: 3'- -CCGGUU----UAGGGCGauGACCCA-CCaGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 20009 | 0.73 | 0.318022 |
Target: 5'- aGGCCGuGGUCgCGCUGCUGGGgucUCGa -3' miRNA: 3'- -CCGGU-UUAGgGCGAUGACCCaccAGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 12251 | 0.79 | 0.115131 |
Target: 5'- gGGCCAgaaGAUCCCGC-ACUGGGUcGG-CGa -3' miRNA: 3'- -CCGGU---UUAGGGCGaUGACCCA-CCaGC- -5' |
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7207 | 3' | -55.4 | NC_001900.1 | + | 20654 | 1.12 | 0.000584 |
Target: 5'- aGGCCAAAUCCCGCUACUGGGUGGUCGa -3' miRNA: 3'- -CCGGUUUAGGGCGAUGACCCACCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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