miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7207 3' -55.4 NC_001900.1 + 9562 0.66 0.708948
Target:  5'- gGGauCCGAacGUCCCGCUGauccGGGUGGa-- -3'
miRNA:   3'- -CC--GGUU--UAGGGCGAUga--CCCACCagc -5'
7207 3' -55.4 NC_001900.1 + 10491 0.66 0.708948
Target:  5'- aGGCCGcgaugggCCuCGgcCUGCUGGGcacgaUGGUCGa -3'
miRNA:   3'- -CCGGUuua----GG-GC--GAUGACCC-----ACCAGC- -5'
7207 3' -55.4 NC_001900.1 + 34950 0.66 0.676304
Target:  5'- uGGgCGAcaucAUCCCGgUAgUGGGUgucgaucaGGUCGa -3'
miRNA:   3'- -CCgGUU----UAGGGCgAUgACCCA--------CCAGC- -5'
7207 3' -55.4 NC_001900.1 + 19058 0.66 0.665324
Target:  5'- cGGCgCAGAcgcugCCCGCguccgACUGgacGGUGcGUCGg -3'
miRNA:   3'- -CCG-GUUUa----GGGCGa----UGAC---CCAC-CAGC- -5'
7207 3' -55.4 NC_001900.1 + 43244 0.66 0.654312
Target:  5'- gGGCCAGcccagucucgGUCcuCCGCUACcuUGGcGUGGcCGa -3'
miRNA:   3'- -CCGGUU----------UAG--GGCGAUG--ACC-CACCaGC- -5'
7207 3' -55.4 NC_001900.1 + 44461 0.66 0.654312
Target:  5'- aGUCAGAUCCCGUUGCcgcuUGGGUaucUCGc -3'
miRNA:   3'- cCGGUUUAGGGCGAUG----ACCCAcc-AGC- -5'
7207 3' -55.4 NC_001900.1 + 34177 0.68 0.588163
Target:  5'- cGCCAggAGUCCUgguagagggaGCUgaACUGGGUGG-CGc -3'
miRNA:   3'- cCGGU--UUAGGG----------CGA--UGACCCACCaGC- -5'
7207 3' -55.4 NC_001900.1 + 12744 0.68 0.588163
Target:  5'- cGUCAAGgaCgCGCUGCgGGGUGaGUCGa -3'
miRNA:   3'- cCGGUUUa-GgGCGAUGaCCCAC-CAGC- -5'
7207 3' -55.4 NC_001900.1 + 14062 0.68 0.555463
Target:  5'- -aUCGAGgacUCCCGCgaggGCUGGGcagccgccuUGGUCGa -3'
miRNA:   3'- ccGGUUU---AGGGCGa---UGACCC---------ACCAGC- -5'
7207 3' -55.4 NC_001900.1 + 15805 0.69 0.491905
Target:  5'- gGGCCAGAaggCCCGCgaagccGUGGUCGa -3'
miRNA:   3'- -CCGGUUUa--GGGCGaugaccCACCAGC- -5'
7207 3' -55.4 NC_001900.1 + 10403 0.69 0.481628
Target:  5'- uGCCuggcGAUCCCG-UACaUGcGGUGGUCGc -3'
miRNA:   3'- cCGGu---UUAGGGCgAUG-AC-CCACCAGC- -5'
7207 3' -55.4 NC_001900.1 + 5596 0.7 0.461395
Target:  5'- uGGCCGgccGAUCCaugaCGCgg--GGGUGGUCa -3'
miRNA:   3'- -CCGGU---UUAGG----GCGaugaCCCACCAGc -5'
7207 3' -55.4 NC_001900.1 + 14697 0.7 0.460395
Target:  5'- cGCCAAcgCCCcgaagcugcacucGCUGCc-GGUGGUCGa -3'
miRNA:   3'- cCGGUUuaGGG-------------CGAUGacCCACCAGC- -5'
7207 3' -55.4 NC_001900.1 + 15957 0.7 0.441619
Target:  5'- uGGCCGAucaCUCGCcaacCUGGGUGG-CGg -3'
miRNA:   3'- -CCGGUUua-GGGCGau--GACCCACCaGC- -5'
7207 3' -55.4 NC_001900.1 + 20101 0.71 0.41288
Target:  5'- gGGCCAAcaucAUCCCGUacCUGGGUcGG-CGc -3'
miRNA:   3'- -CCGGUU----UAGGGCGauGACCCA-CCaGC- -5'
7207 3' -55.4 NC_001900.1 + 20009 0.73 0.318022
Target:  5'- aGGCCGuGGUCgCGCUGCUGGGgucUCGa -3'
miRNA:   3'- -CCGGU-UUAGgGCGAUGACCCaccAGC- -5'
7207 3' -55.4 NC_001900.1 + 12251 0.79 0.115131
Target:  5'- gGGCCAgaaGAUCCCGC-ACUGGGUcGG-CGa -3'
miRNA:   3'- -CCGGU---UUAGGGCGaUGACCCA-CCaGC- -5'
7207 3' -55.4 NC_001900.1 + 20654 1.12 0.000584
Target:  5'- aGGCCAAAUCCCGCUACUGGGUGGUCGa -3'
miRNA:   3'- -CCGGUUUAGGGCGAUGACCCACCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.