Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7207 | 5' | -57.8 | NC_001900.1 | + | 21256 | 0.66 | 0.480335 |
|
Target: 5'- --gGAGCGCCUGCGGgagcuGCAGGa--- -3' miRNA: 3'- cugCUCGUGGACGUCac---CGUCCagaa -5' |
|||||||
| 7207 | 5' | -57.8 | NC_001900.1 | + | 17698 | 0.66 | 0.455852 |
|
Target: 5'- uGACGGGCGCuCUGCAGgcucuggGGCcugugcugaccguGGUCg- -3' miRNA: 3'- -CUGCUCGUG-GACGUCa------CCGu------------CCAGaa -5' |
|||||||
| 7207 | 5' | -57.8 | NC_001900.1 | + | 41207 | 0.66 | 0.449836 |
|
Target: 5'- cGCGcccAGCACCUGCuGGUGcaGCGGGUUg- -3' miRNA: 3'- cUGC---UCGUGGACG-UCAC--CGUCCAGaa -5' |
|||||||
| 7207 | 5' | -57.8 | NC_001900.1 | + | 11483 | 0.69 | 0.314532 |
|
Target: 5'- aACGAGCGCCUGUGGgGGCAccgcgacGGUUUc -3' miRNA: 3'- cUGCUCGUGGACGUCaCCGU-------CCAGAa -5' |
|||||||
| 7207 | 5' | -57.8 | NC_001900.1 | + | 14399 | 0.72 | 0.213481 |
|
Target: 5'- cGAUGAuGCACUggGCGGacUGGCAGGUCg- -3' miRNA: 3'- -CUGCU-CGUGGa-CGUC--ACCGUCCAGaa -5' |
|||||||
| 7207 | 5' | -57.8 | NC_001900.1 | + | 20691 | 1.04 | 0.000793 |
|
Target: 5'- uGACGAGCACCUGCAGUGGCAGGUCUUc -3' miRNA: 3'- -CUGCUCGUGGACGUCACCGUCCAGAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home