miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7208 5' -55.2 NC_001900.1 + 34769 0.66 0.747835
Target:  5'- cGGUCagcgcaccGCCGuccUCGaACCUGUACUGCUCGc -3'
miRNA:   3'- -CCAGc-------UGGU---AGC-UGGACAUGGUGGGC- -5'
7208 5' -55.2 NC_001900.1 + 37486 0.66 0.747834
Target:  5'- aGUCGGuuCCAgCGGCUUGUcagugACCACCgGg -3'
miRNA:   3'- cCAGCU--GGUaGCUGGACA-----UGGUGGgC- -5'
7208 5' -55.2 NC_001900.1 + 22187 0.66 0.737466
Target:  5'- cGGUucCGGCCGUugCGACCUuaaGUGCgACCUu -3'
miRNA:   3'- -CCA--GCUGGUA--GCUGGA---CAUGgUGGGc -5'
7208 5' -55.2 NC_001900.1 + 25327 0.66 0.737466
Target:  5'- -cUCGauGCCGUCGACC-GUGCCAgcgaCCa -3'
miRNA:   3'- ccAGC--UGGUAGCUGGaCAUGGUg---GGc -5'
7208 5' -55.2 NC_001900.1 + 16141 0.66 0.731194
Target:  5'- gGGUCGACCugcgCGAUCUGUucagagaugaagauCCGCUg- -3'
miRNA:   3'- -CCAGCUGGua--GCUGGACAu-------------GGUGGgc -5'
7208 5' -55.2 NC_001900.1 + 10985 0.66 0.725941
Target:  5'- aGGUCgccgacaGAUCAUCGGCgCUGUcaagaACgACCCa -3'
miRNA:   3'- -CCAG-------CUGGUAGCUG-GACA-----UGgUGGGc -5'
7208 5' -55.2 NC_001900.1 + 8127 0.66 0.715366
Target:  5'- aGGUCGAgggcucucgcaccCUGUCGAUCUGcaaCGCCCa -3'
miRNA:   3'- -CCAGCU-------------GGUAGCUGGACaugGUGGGc -5'
7208 5' -55.2 NC_001900.1 + 28394 0.66 0.70578
Target:  5'- cGUC-ACCGUCGAaCUcgACCACCCa -3'
miRNA:   3'- cCAGcUGGUAGCUgGAcaUGGUGGGc -5'
7208 5' -55.2 NC_001900.1 + 31025 0.67 0.69506
Target:  5'- aGGUUGAUgA-CGAUCUGgACCACCgGc -3'
miRNA:   3'- -CCAGCUGgUaGCUGGACaUGGUGGgC- -5'
7208 5' -55.2 NC_001900.1 + 32738 0.67 0.69506
Target:  5'- cGGUUGGCCAUCaggagGAUgUGguugcCCGCCUGg -3'
miRNA:   3'- -CCAGCUGGUAG-----CUGgACau---GGUGGGC- -5'
7208 5' -55.2 NC_001900.1 + 30589 0.67 0.691833
Target:  5'- uGGUCGACCAgaucuuggccuuggUCGuCUUGUGCUcCuuGg -3'
miRNA:   3'- -CCAGCUGGU--------------AGCuGGACAUGGuGggC- -5'
7208 5' -55.2 NC_001900.1 + 3027 0.67 0.684282
Target:  5'- aGG-CGACCggCGACggGU-CCGCCUGg -3'
miRNA:   3'- -CCaGCUGGuaGCUGgaCAuGGUGGGC- -5'
7208 5' -55.2 NC_001900.1 + 46848 0.67 0.673455
Target:  5'- --aCGGCCGUCGGgaaCUGUGCCuuGCCUu -3'
miRNA:   3'- ccaGCUGGUAGCUg--GACAUGG--UGGGc -5'
7208 5' -55.2 NC_001900.1 + 24512 0.67 0.673454
Target:  5'- cGUCGAUgAacUCGGCCUGUGCCGg--- -3'
miRNA:   3'- cCAGCUGgU--AGCUGGACAUGGUgggc -5'
7208 5' -55.2 NC_001900.1 + 17455 0.67 0.673454
Target:  5'- cGGUCGGCCcgaacCGGCCga-ACCGCCa- -3'
miRNA:   3'- -CCAGCUGGua---GCUGGacaUGGUGGgc -5'
7208 5' -55.2 NC_001900.1 + 39343 0.67 0.640782
Target:  5'- -cUCG-CCuUCGGCCcgGaACCACCCGa -3'
miRNA:   3'- ccAGCuGGuAGCUGGa-CaUGGUGGGC- -5'
7208 5' -55.2 NC_001900.1 + 14096 0.68 0.608039
Target:  5'- uGGUCGACCugAUCGACacccACUACCgGg -3'
miRNA:   3'- -CCAGCUGG--UAGCUGgacaUGGUGGgC- -5'
7208 5' -55.2 NC_001900.1 + 34975 0.68 0.597153
Target:  5'- uGUCGAUCAggUCGACCaagGcgGCUGCCCa -3'
miRNA:   3'- cCAGCUGGU--AGCUGGa--Ca-UGGUGGGc -5'
7208 5' -55.2 NC_001900.1 + 21271 0.68 0.597153
Target:  5'- cGGUCGguggcGCgAUCGACCU--GCC-CCCGc -3'
miRNA:   3'- -CCAGC-----UGgUAGCUGGAcaUGGuGGGC- -5'
7208 5' -55.2 NC_001900.1 + 23378 0.68 0.586297
Target:  5'- aGGUccaagCGGCCggUGACC-GUGCCGCCUc -3'
miRNA:   3'- -CCA-----GCUGGuaGCUGGaCAUGGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.