miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7209 5' -53.2 NC_001900.1 + 19446 0.66 0.799534
Target:  5'- gUGAUGUcGuGCaUCUCGUACGACC-Cg -3'
miRNA:   3'- -ACUACGuCuUGcGGAGCAUGCUGGaG- -5'
7209 5' -53.2 NC_001900.1 + 7671 0.66 0.789547
Target:  5'- gGgcGCAGGGCGUCacCGUACguGACCUa -3'
miRNA:   3'- aCuaCGUCUUGCGGa-GCAUG--CUGGAg -5'
7209 5' -53.2 NC_001900.1 + 31370 0.66 0.769068
Target:  5'- aGAgccUGCAGAGCGCCcgucagcaUCGUGCcgagggugucGGCCa- -3'
miRNA:   3'- aCU---ACGUCUUGCGG--------AGCAUG----------CUGGag -5'
7209 5' -53.2 NC_001900.1 + 42244 0.66 0.769068
Target:  5'- ---cGUAGAGCGCgUCGUACG-CUg- -3'
miRNA:   3'- acuaCGUCUUGCGgAGCAUGCuGGag -5'
7209 5' -53.2 NC_001900.1 + 7576 0.66 0.758599
Target:  5'- cGAagGCGcGAACGUCUCcgACGACUUCu -3'
miRNA:   3'- aCUa-CGU-CUUGCGGAGcaUGCUGGAG- -5'
7209 5' -53.2 NC_001900.1 + 27175 0.67 0.747993
Target:  5'- aGAuUGCGGAGCGCCcagaCG-ACGugCUg -3'
miRNA:   3'- aCU-ACGUCUUGCGGa---GCaUGCugGAg -5'
7209 5' -53.2 NC_001900.1 + 8256 0.67 0.747993
Target:  5'- cGGUGUGGGACGCCcUGgcugACGAgCUg -3'
miRNA:   3'- aCUACGUCUUGCGGaGCa---UGCUgGAg -5'
7209 5' -53.2 NC_001900.1 + 44100 0.67 0.730772
Target:  5'- cGAUGCcuuccucgacccuguGGAACuCCUCGgugAUGGCUUCa -3'
miRNA:   3'- aCUACG---------------UCUUGcGGAGCa--UGCUGGAG- -5'
7209 5' -53.2 NC_001900.1 + 21268 0.67 0.726423
Target:  5'- gGAgcUGCAGGAUGCa--GUACGugcCCUCg -3'
miRNA:   3'- aCU--ACGUCUUGCGgagCAUGCu--GGAG- -5'
7209 5' -53.2 NC_001900.1 + 23888 0.67 0.726423
Target:  5'- cGucgGCAGGcuCGCCUCGUAccCGGCC-Cg -3'
miRNA:   3'- aCua-CGUCUu-GCGGAGCAU--GCUGGaG- -5'
7209 5' -53.2 NC_001900.1 + 3518 0.67 0.704457
Target:  5'- cGGUGacaucCAGGACGCCaUCGacGCGGCgCUCg -3'
miRNA:   3'- aCUAC-----GUCUUGCGG-AGCa-UGCUG-GAG- -5'
7209 5' -53.2 NC_001900.1 + 33167 0.68 0.691128
Target:  5'- -aAUGCGGAGCGaguaCUCGUccaccagcuccuCGGCCUCc -3'
miRNA:   3'- acUACGUCUUGCg---GAGCAu-----------GCUGGAG- -5'
7209 5' -53.2 NC_001900.1 + 31070 0.68 0.670979
Target:  5'- --uUGguGAACGCCUgG-ACGAUCUg -3'
miRNA:   3'- acuACguCUUGCGGAgCaUGCUGGAg -5'
7209 5' -53.2 NC_001900.1 + 41083 0.68 0.659727
Target:  5'- cGAUGCugguGAGgagguugcUGCCUCGaUGCGGCCa- -3'
miRNA:   3'- aCUACGu---CUU--------GCGGAGC-AUGCUGGag -5'
7209 5' -53.2 NC_001900.1 + 28208 0.69 0.614559
Target:  5'- cGAUGUcGuugGCCUCGUccuugcggACGGCCUCg -3'
miRNA:   3'- aCUACGuCuugCGGAGCA--------UGCUGGAG- -5'
7209 5' -53.2 NC_001900.1 + 32344 0.69 0.580813
Target:  5'- aGAUGU-GGACGagguaCUCGUACG-CCUCc -3'
miRNA:   3'- aCUACGuCUUGCg----GAGCAUGCuGGAG- -5'
7209 5' -53.2 NC_001900.1 + 6289 0.7 0.569642
Target:  5'- cGG-GCuGGACGCCUgGcACGACCUg -3'
miRNA:   3'- aCUaCGuCUUGCGGAgCaUGCUGGAg -5'
7209 5' -53.2 NC_001900.1 + 48163 0.7 0.558524
Target:  5'- ---cGCGGAaaaGCGCCUgGU-CGACCUUc -3'
miRNA:   3'- acuaCGUCU---UGCGGAgCAuGCUGGAG- -5'
7209 5' -53.2 NC_001900.1 + 35916 0.7 0.558524
Target:  5'- aGgcGCuGGGCGUCUCGUcggaGACCUCc -3'
miRNA:   3'- aCuaCGuCUUGCGGAGCAug--CUGGAG- -5'
7209 5' -53.2 NC_001900.1 + 31085 0.71 0.493389
Target:  5'- uUGAUGguGAcgAgGUCUCcUugGACCUCa -3'
miRNA:   3'- -ACUACguCU--UgCGGAGcAugCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.