miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7211 3' -58.3 NC_001900.1 + 26712 0.66 0.482459
Target:  5'- gAGCgACAcuaaugACCUGCauuuauGCUGCCCGGa-- -3'
miRNA:   3'- -UCG-UGU------UGGACGac----CGACGGGCCaag -5'
7211 3' -58.3 NC_001900.1 + 48660 0.66 0.442273
Target:  5'- uGCACAAUC-GCgGGCUGUCgGGcugUCg -3'
miRNA:   3'- uCGUGUUGGaCGaCCGACGGgCCa--AG- -5'
7211 3' -58.3 NC_001900.1 + 27823 0.67 0.422902
Target:  5'- gAGCACGGCgaGCUGGCUGUUgaugaacgaGGUc- -3'
miRNA:   3'- -UCGUGUUGgaCGACCGACGGg--------CCAag -5'
7211 3' -58.3 NC_001900.1 + 48617 0.67 0.422902
Target:  5'- uGCAUAGgCUGCUcGUuaugUGCCCGGUa- -3'
miRNA:   3'- uCGUGUUgGACGAcCG----ACGGGCCAag -5'
7211 3' -58.3 NC_001900.1 + 2220 0.67 0.394823
Target:  5'- aGGCACAGuucCCgacgGCcgUGcGCUGCCCGGa-- -3'
miRNA:   3'- -UCGUGUU---GGa---CG--AC-CGACGGGCCaag -5'
7211 3' -58.3 NC_001900.1 + 44396 0.67 0.385735
Target:  5'- aAGUACAGCUcgaucGCUGGCguaccGUCCGGggUCa -3'
miRNA:   3'- -UCGUGUUGGa----CGACCGa----CGGGCCa-AG- -5'
7211 3' -58.3 NC_001900.1 + 9671 0.68 0.367978
Target:  5'- cAGCuCAACgaGCUGGgaGaCCCGGaUCc -3'
miRNA:   3'- -UCGuGUUGgaCGACCgaC-GGGCCaAG- -5'
7211 3' -58.3 NC_001900.1 + 9304 0.68 0.359313
Target:  5'- gAGUcgACGGCUuccacucauggaUGCUGGCUGaCCCGGa-- -3'
miRNA:   3'- -UCG--UGUUGG------------ACGACCGAC-GGGCCaag -5'
7211 3' -58.3 NC_001900.1 + 5941 0.68 0.350791
Target:  5'- gAGCGCAGCUcgaugcucuggGCUGGCUGCugaaCCGGc-- -3'
miRNA:   3'- -UCGUGUUGGa----------CGACCGACG----GGCCaag -5'
7211 3' -58.3 NC_001900.1 + 33482 0.68 0.342414
Target:  5'- gGGUagACAGCCUGgUGGCUGUCaaGUUUg -3'
miRNA:   3'- -UCG--UGUUGGACgACCGACGGgcCAAG- -5'
7211 3' -58.3 NC_001900.1 + 17819 1.1 0.000294
Target:  5'- cAGCACAACCUGCUGGCUGCCCGGUUCg -3'
miRNA:   3'- -UCGUGUUGGACGACCGACGGGCCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.