miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7212 3' -61.3 NC_001900.1 + 45369 0.67 0.328532
Target:  5'- uCUCCacGUCGacCCCGAggaGCUGGUCGAACg -3'
miRNA:   3'- -GAGGc-CAGCc-GGGCU---UGGCCGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 40302 0.68 0.320912
Target:  5'- -gCCGGUCGGCagUGAGCCgcugcGGCCGu-- -3'
miRNA:   3'- gaGGCCAGCCGg-GCUUGG-----CCGGCuug -5'
7212 3' -61.3 NC_001900.1 + 5955 0.68 0.313426
Target:  5'- gCUCUGGgcUGGCugCUGAACCGGCCaGGCc -3'
miRNA:   3'- -GAGGCCa-GCCG--GGCUUGGCCGGcUUG- -5'
7212 3' -61.3 NC_001900.1 + 31612 0.68 0.306073
Target:  5'- gUUCGGcCGGUUCGGGCCGaCCGGAg -3'
miRNA:   3'- gAGGCCaGCCGGGCUUGGCcGGCUUg -5'
7212 3' -61.3 NC_001900.1 + 23322 0.68 0.306073
Target:  5'- -gCCGGggcgCGGCCCGcgUCGGCgaGAAg -3'
miRNA:   3'- gaGGCCa---GCCGGGCuuGGCCGg-CUUg -5'
7212 3' -61.3 NC_001900.1 + 42553 0.68 0.298852
Target:  5'- aUCUGGcUGGCCa--GCgGGCCGAGCu -3'
miRNA:   3'- gAGGCCaGCCGGgcuUGgCCGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 25922 0.68 0.298852
Target:  5'- gUCUGGUCcucGCCCGGGCUgcgcccgucagGGCCGAc- -3'
miRNA:   3'- gAGGCCAGc--CGGGCUUGG-----------CCGGCUug -5'
7212 3' -61.3 NC_001900.1 + 16539 0.68 0.296712
Target:  5'- -gCCGGUCGGUccugaCCGAACUGGagcgucacaggcacCUGAGCu -3'
miRNA:   3'- gaGGCCAGCCG-----GGCUUGGCC--------------GGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 19594 0.69 0.277985
Target:  5'- ---aGGUCGGCCgCGAGCaGGgCGGGCu -3'
miRNA:   3'- gaggCCAGCCGG-GCUUGgCCgGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 6315 0.69 0.245812
Target:  5'- -cCUGGUCGGCgcagCCGcACCGGCCa--- -3'
miRNA:   3'- gaGGCCAGCCG----GGCuUGGCCGGcuug -5'
7212 3' -61.3 NC_001900.1 + 14381 0.69 0.245812
Target:  5'- -gCCGGUCGGCUCGcAuggcgaugaugcACUGGgCGGACu -3'
miRNA:   3'- gaGGCCAGCCGGGC-U------------UGGCCgGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 43150 0.69 0.245812
Target:  5'- gCUCCGG--GGCuCCGAGCCGuCCGggUu -3'
miRNA:   3'- -GAGGCCagCCG-GGCUUGGCcGGCuuG- -5'
7212 3' -61.3 NC_001900.1 + 23816 0.7 0.22803
Target:  5'- gCUCCGGUCGGCUauCGGcGCUGGCUuccGGCg -3'
miRNA:   3'- -GAGGCCAGCCGG--GCU-UGGCCGGc--UUG- -5'
7212 3' -61.3 NC_001900.1 + 27476 0.71 0.20082
Target:  5'- -gCCGcaCGGCCuUGAGCCGGCCGucGGCg -3'
miRNA:   3'- gaGGCcaGCCGG-GCUUGGCCGGC--UUG- -5'
7212 3' -61.3 NC_001900.1 + 29749 0.71 0.19075
Target:  5'- -aCCGuGUUGGCCCcaccgccguaGAcCCGGCCGAAg -3'
miRNA:   3'- gaGGC-CAGCCGGG----------CUuGGCCGGCUUg -5'
7212 3' -61.3 NC_001900.1 + 31798 0.71 0.19075
Target:  5'- -gCCGGUcgagaugacCGGCCCGAGCCcGGUgaaGAACu -3'
miRNA:   3'- gaGGCCA---------GCCGGGCUUGG-CCGg--CUUG- -5'
7212 3' -61.3 NC_001900.1 + 5741 0.72 0.167498
Target:  5'- --aCGGUCGGCCCGAcgugagggaGCCaGCgUGAGCa -3'
miRNA:   3'- gagGCCAGCCGGGCU---------UGGcCG-GCUUG- -5'
7212 3' -61.3 NC_001900.1 + 39275 0.72 0.15893
Target:  5'- gUCCGGuUCGGaagcgggaccaCCgGGACCGcGCCGAGCc -3'
miRNA:   3'- gAGGCC-AGCC-----------GGgCUUGGC-CGGCUUG- -5'
7212 3' -61.3 NC_001900.1 + 15765 0.73 0.146818
Target:  5'- ---aGGUgCGGCCUGcGCCGGCCGAcGCg -3'
miRNA:   3'- gaggCCA-GCCGGGCuUGGCCGGCU-UG- -5'
7212 3' -61.3 NC_001900.1 + 23316 0.73 0.128492
Target:  5'- --gCGGUCGGCCCcGGCUGGgCCGAGu -3'
miRNA:   3'- gagGCCAGCCGGGcUUGGCC-GGCUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.