miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7212 5' -57.6 NC_001900.1 + 18785 0.66 0.561632
Target:  5'- gUCGCgGAgGCGUucGAGGagCUGGGACAc- -3'
miRNA:   3'- -AGUGgCU-CGCA--CUCCa-GGCCCUGUag -5'
7212 5' -57.6 NC_001900.1 + 11748 0.67 0.519345
Target:  5'- aUCACCGAGCuG-GAGaacgagCUGGGACAg- -3'
miRNA:   3'- -AGUGGCUCG-CaCUCca----GGCCCUGUag -5'
7212 5' -57.6 NC_001900.1 + 38516 0.67 0.519345
Target:  5'- -aGCUG-GCGUGGGGUugggggagcCUGGGAcCGUCg -3'
miRNA:   3'- agUGGCuCGCACUCCA---------GGCCCU-GUAG- -5'
7212 5' -57.6 NC_001900.1 + 1377 0.68 0.448712
Target:  5'- aUCGCUgcaGAGCGUGAGGcugccCUGGucgaaGACAUCa -3'
miRNA:   3'- -AGUGG---CUCGCACUCCa----GGCC-----CUGUAG- -5'
7212 5' -57.6 NC_001900.1 + 8451 0.68 0.439052
Target:  5'- aCAUCGAGaugGUGAGGgCUGGGGCugauGUCu -3'
miRNA:   3'- aGUGGCUCg--CACUCCaGGCCCUG----UAG- -5'
7212 5' -57.6 NC_001900.1 + 31969 0.68 0.423848
Target:  5'- cCACCGAGCugcuggaagaccgggGUGAGGccagUCUGGaACGUCg -3'
miRNA:   3'- aGUGGCUCG---------------CACUCC----AGGCCcUGUAG- -5'
7212 5' -57.6 NC_001900.1 + 22995 0.69 0.392614
Target:  5'- uUguCCGGGCGUGGuGGgCCGGGAUg-- -3'
miRNA:   3'- -AguGGCUCGCACU-CCaGGCCCUGuag -5'
7212 5' -57.6 NC_001900.1 + 22442 0.74 0.190479
Target:  5'- aUCAcCCGAGgGUucaaaGAGGUCCGcgaGGACAUCc -3'
miRNA:   3'- -AGU-GGCUCgCA-----CUCCAGGC---CCUGUAG- -5'
7212 5' -57.6 NC_001900.1 + 10451 0.74 0.185474
Target:  5'- aUCGCCGAGCGcGAGGagaugcgccgCUGGGACGa- -3'
miRNA:   3'- -AGUGGCUCGCaCUCCa---------GGCCCUGUag -5'
7212 5' -57.6 NC_001900.1 + 17187 0.75 0.175811
Target:  5'- uUCACCGA-CGUGgugucgcaGGGUCCGGGGC-UCc -3'
miRNA:   3'- -AGUGGCUcGCAC--------UCCAGGCCCUGuAG- -5'
7212 5' -57.6 NC_001900.1 + 17487 1.09 0.000584
Target:  5'- cUCACCGAGCGUGAGGUCCGGGACAUCc -3'
miRNA:   3'- -AGUGGCUCGCACUCCAGGCCCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.