miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7213 3' -55.2 NC_001900.1 + 323 0.66 0.671298
Target:  5'- --gGGCcGGGGAAUUGaucCGGCAaccGCc -3'
miRNA:   3'- ugaCCGuCCCCUUAACgaaGCCGU---CG- -5'
7213 3' -55.2 NC_001900.1 + 14164 0.66 0.660095
Target:  5'- cGCguccgGGCGGcGGGucgcaaGCUgaagacguUCGGCGGCa -3'
miRNA:   3'- -UGa----CCGUC-CCCuuaa--CGA--------AGCCGUCG- -5'
7213 3' -55.2 NC_001900.1 + 23279 0.67 0.592689
Target:  5'- cGCUGGC-GGGGA--UGaCUUCGaGCgAGUc -3'
miRNA:   3'- -UGACCGuCCCCUuaAC-GAAGC-CG-UCG- -5'
7213 3' -55.2 NC_001900.1 + 24624 0.69 0.451098
Target:  5'- cACUGcGUGGGGccaaggcgGCUUCGGCGGUu -3'
miRNA:   3'- -UGAC-CGUCCCcuuaa---CGAAGCCGUCG- -5'
7213 3' -55.2 NC_001900.1 + 1262 0.71 0.36764
Target:  5'- aGCUGGCGGcGGGuucggUGgUUCgaccGGCAGCc -3'
miRNA:   3'- -UGACCGUC-CCCuua--ACgAAG----CCGUCG- -5'
7213 3' -55.2 NC_001900.1 + 20902 0.71 0.35885
Target:  5'- uCUGGCuGGGGcaccGAgaccGcCUUCGGCGGCu -3'
miRNA:   3'- uGACCGuCCCC----UUaa--C-GAAGCCGUCG- -5'
7213 3' -55.2 NC_001900.1 + 33339 0.71 0.350208
Target:  5'- uGCUgGGCAGGGGGAUcccaggGCgacucagUCGGCGucuGCu -3'
miRNA:   3'- -UGA-CCGUCCCCUUAa-----CGa------AGCCGU---CG- -5'
7213 3' -55.2 NC_001900.1 + 45885 0.75 0.202922
Target:  5'- --cGGCGGGGGA---GCagUCGGUAGCg -3'
miRNA:   3'- ugaCCGUCCCCUuaaCGa-AGCCGUCG- -5'
7213 3' -55.2 NC_001900.1 + 38304 0.83 0.054031
Target:  5'- uCUGGCAuGGGGAugauucgUGCgUUCGGCAGCg -3'
miRNA:   3'- uGACCGU-CCCCUua-----ACG-AAGCCGUCG- -5'
7213 3' -55.2 NC_001900.1 + 16905 1.11 0.000516
Target:  5'- aACUGGCAGGGGAAUUGCUUCGGCAGCu -3'
miRNA:   3'- -UGACCGUCCCCUUAACGAAGCCGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.