miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7213 5' -54.4 NC_001900.1 + 24227 0.66 0.730125
Target:  5'- aCGCUCaCCGACAUC--CCAGuGGCAg- -3'
miRNA:   3'- aGCGAG-GGUUGUGGauGGUC-CUGUag -5'
7213 5' -54.4 NC_001900.1 + 10776 0.66 0.730125
Target:  5'- -aGCUgCCGAC-CUggGCCGGGACuUCu -3'
miRNA:   3'- agCGAgGGUUGuGGa-UGGUCCUGuAG- -5'
7213 5' -54.4 NC_001900.1 + 18068 0.66 0.718191
Target:  5'- cUCGCcgUCGACACCgaaACCAccgggcuGGACAUCu -3'
miRNA:   3'- -AGCGagGGUUGUGGa--UGGU-------CCUGUAG- -5'
7213 5' -54.4 NC_001900.1 + 794 0.66 0.708346
Target:  5'- gUGCUCCCAAcCGCgUGCU-GGGCGa- -3'
miRNA:   3'- aGCGAGGGUU-GUGgAUGGuCCUGUag -5'
7213 5' -54.4 NC_001900.1 + 39127 0.66 0.708346
Target:  5'- gCGCUCCCcgAugACCUggacgGCCGGGGg--- -3'
miRNA:   3'- aGCGAGGG--UugUGGA-----UGGUCCUguag -5'
7213 5' -54.4 NC_001900.1 + 19076 0.66 0.708346
Target:  5'- gCGCUUCaacuuGACgACCggugACCAGGGCGUg -3'
miRNA:   3'- aGCGAGGg----UUG-UGGa---UGGUCCUGUAg -5'
7213 5' -54.4 NC_001900.1 + 30928 0.66 0.686256
Target:  5'- cUGCg-CCGACGagUCUGCCAGGACGc- -3'
miRNA:   3'- aGCGagGGUUGU--GGAUGGUCCUGUag -5'
7213 5' -54.4 NC_001900.1 + 34811 0.67 0.66395
Target:  5'- cUCGCUCCUccuuGACcCgCUugC-GGACAUCg -3'
miRNA:   3'- -AGCGAGGG----UUGuG-GAugGuCCUGUAG- -5'
7213 5' -54.4 NC_001900.1 + 14887 0.67 0.641519
Target:  5'- -aGCUCCC----UCUACCAGGAC-UCc -3'
miRNA:   3'- agCGAGGGuuguGGAUGGUCCUGuAG- -5'
7213 5' -54.4 NC_001900.1 + 29510 0.68 0.585467
Target:  5'- -gGCgaaUCAGCGCCUugCAGGucACAUCc -3'
miRNA:   3'- agCGag-GGUUGUGGAugGUCC--UGUAG- -5'
7213 5' -54.4 NC_001900.1 + 14431 0.69 0.541291
Target:  5'- aCGUUCaCCAACAUCaAgCAGGACAg- -3'
miRNA:   3'- aGCGAG-GGUUGUGGaUgGUCCUGUag -5'
7213 5' -54.4 NC_001900.1 + 2413 0.69 0.519612
Target:  5'- -gGCUCCCGGuccuuuCugCUGCCGGGugGc- -3'
miRNA:   3'- agCGAGGGUU------GugGAUGGUCCugUag -5'
7213 5' -54.4 NC_001900.1 + 30282 0.69 0.508901
Target:  5'- -aGCUCCUcgAACGCCU-CCGcGACAUCc -3'
miRNA:   3'- agCGAGGG--UUGUGGAuGGUcCUGUAG- -5'
7213 5' -54.4 NC_001900.1 + 21175 0.7 0.498283
Target:  5'- cCGCUCCgGGCAUCaACgAGGGgAUCu -3'
miRNA:   3'- aGCGAGGgUUGUGGaUGgUCCUgUAG- -5'
7213 5' -54.4 NC_001900.1 + 429 0.7 0.498283
Target:  5'- -aGCUCaCAGCACCcaUACCGGGcACAUa -3'
miRNA:   3'- agCGAGgGUUGUGG--AUGGUCC-UGUAg -5'
7213 5' -54.4 NC_001900.1 + 21392 0.7 0.446806
Target:  5'- cUCGCUUCCcAUugCgggGCUugAGGACAUCg -3'
miRNA:   3'- -AGCGAGGGuUGugGa--UGG--UCCUGUAG- -5'
7213 5' -54.4 NC_001900.1 + 35891 0.71 0.417376
Target:  5'- aCGCUUCCAAcCGCCaGCCGcgaucaggcgcuGGGCGUCu -3'
miRNA:   3'- aGCGAGGGUU-GUGGaUGGU------------CCUGUAG- -5'
7213 5' -54.4 NC_001900.1 + 15420 0.71 0.407831
Target:  5'- gUCGaC-CCgGACGCCUACgAGGGCGUg -3'
miRNA:   3'- -AGC-GaGGgUUGUGGAUGgUCCUGUAg -5'
7213 5' -54.4 NC_001900.1 + 41206 0.73 0.30455
Target:  5'- gCGCgCCCAGCACCUGCUGGuGCAg- -3'
miRNA:   3'- aGCGaGGGUUGUGGAUGGUCcUGUag -5'
7213 5' -54.4 NC_001900.1 + 27148 0.74 0.274889
Target:  5'- aUCGC-CCCGACGCCUGCaaucaaCGGGAgAUUg -3'
miRNA:   3'- -AGCGaGGGUUGUGGAUG------GUCCUgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.