miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7214 5' -58.5 NC_001900.1 + 41745 0.66 0.525901
Target:  5'- uCGACCGCCGGGUagcGGUuguagaGGUGCGg-- -3'
miRNA:   3'- -GUUGGUGGCCCGca-CCG------CCAUGCagu -5'
7214 5' -58.5 NC_001900.1 + 39291 0.66 0.524861
Target:  5'- gGACCACCGGGaccgcgccgagccCGUGGgGGU-CGc-- -3'
miRNA:   3'- gUUGGUGGCCC-------------GCACCgCCAuGCagu -5'
7214 5' -58.5 NC_001900.1 + 33662 0.66 0.515532
Target:  5'- cCGGcCUugUGGGCGUGGUGGccaagGCG-CAu -3'
miRNA:   3'- -GUU-GGugGCCCGCACCGCCa----UGCaGU- -5'
7214 5' -58.5 NC_001900.1 + 14403 0.66 0.515532
Target:  5'- gAugCACUGGGCGgacUGGCaGGUcgagACGUUc -3'
miRNA:   3'- gUugGUGGCCCGC---ACCG-CCA----UGCAGu -5'
7214 5' -58.5 NC_001900.1 + 1183 0.66 0.514499
Target:  5'- gAGCCGCCGGaaGCGgccggGGCGGUuuaggcaccggcaACG-CAg -3'
miRNA:   3'- gUUGGUGGCC--CGCa----CCGCCA-------------UGCaGU- -5'
7214 5' -58.5 NC_001900.1 + 26821 0.66 0.495051
Target:  5'- -cAUCGCUGGGCcggGGCGGU-CGUUc -3'
miRNA:   3'- guUGGUGGCCCGca-CCGCCAuGCAGu -5'
7214 5' -58.5 NC_001900.1 + 40315 0.68 0.417259
Target:  5'- gAGCCGCUGcGGcCGUGGUuGGccGCGUCGa -3'
miRNA:   3'- gUUGGUGGC-CC-GCACCG-CCa-UGCAGU- -5'
7214 5' -58.5 NC_001900.1 + 8862 0.68 0.389177
Target:  5'- gGGCCACUcgaugggGGGCGgcaUGGUGGUcgaaaucgcggcGCGUCAc -3'
miRNA:   3'- gUUGGUGG-------CCCGC---ACCGCCA------------UGCAGU- -5'
7214 5' -58.5 NC_001900.1 + 22990 0.7 0.293444
Target:  5'- -cGCCcuuguCCGGGCGUGGUGGgcCGg-- -3'
miRNA:   3'- guUGGu----GGCCCGCACCGCCauGCagu -5'
7214 5' -58.5 NC_001900.1 + 20938 0.72 0.24006
Target:  5'- uGGCuCACCGGGUucGUccGGCGGU-CGUCAa -3'
miRNA:   3'- gUUG-GUGGCCCG--CA--CCGCCAuGCAGU- -5'
7214 5' -58.5 NC_001900.1 + 8347 0.72 0.228046
Target:  5'- uGACCGCUGGGCuUGGgGGaUGCGcCAg -3'
miRNA:   3'- gUUGGUGGCCCGcACCgCC-AUGCaGU- -5'
7214 5' -58.5 NC_001900.1 + 16836 1.08 0.00057
Target:  5'- gCAACCACCGGGCGUGGCGGUACGUCAu -3'
miRNA:   3'- -GUUGGUGGCCCGCACCGCCAUGCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.