miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7215 3' -55 NC_001900.1 + 20883 0.66 0.669704
Target:  5'- aCAAGGCCAGcucgccGAGG-CgCUGCUGGAg- -3'
miRNA:   3'- -GUUCCGGUUc-----CUUCaG-GACGACCUgc -5'
7215 3' -55 NC_001900.1 + 16530 0.67 0.613724
Target:  5'- uCGAGGCCAGccGGucGGUCCUGaccgaaCUGGAgCGu -3'
miRNA:   3'- -GUUCCGGUU--CCu-UCAGGAC------GACCU-GC- -5'
7215 3' -55 NC_001900.1 + 26989 0.67 0.613724
Target:  5'- --uGGCCucGGAAGgCCgGCUGGAa- -3'
miRNA:   3'- guuCCGGuuCCUUCaGGaCGACCUgc -5'
7215 3' -55 NC_001900.1 + 25949 0.68 0.580251
Target:  5'- uCAGGGCCGAccaGAAGUgguuccacgUCUGCUGGAg- -3'
miRNA:   3'- -GUUCCGGUUc--CUUCA---------GGACGACCUgc -5'
7215 3' -55 NC_001900.1 + 19691 0.68 0.53628
Target:  5'- --uGGCCGAGGAgaugGGUCCggUGCUGaucGGCa -3'
miRNA:   3'- guuCCGGUUCCU----UCAGG--ACGAC---CUGc -5'
7215 3' -55 NC_001900.1 + 8915 0.7 0.432552
Target:  5'- aCAGaGUCGcGGcagcGGUCCUGCUGGACGc -3'
miRNA:   3'- -GUUcCGGUuCCu---UCAGGACGACCUGC- -5'
7215 3' -55 NC_001900.1 + 10489 0.73 0.29387
Target:  5'- aGAGGCCGcgauGGGccucGG-CCUGCUGGGCa -3'
miRNA:   3'- gUUCCGGUu---CCU----UCaGGACGACCUGc -5'
7215 3' -55 NC_001900.1 + 27533 0.74 0.272074
Target:  5'- ---cGCCGAGGAAGUCggcgguCUGUUGGAUGg -3'
miRNA:   3'- guucCGGUUCCUUCAG------GACGACCUGC- -5'
7215 3' -55 NC_001900.1 + 15883 0.74 0.245057
Target:  5'- gGAGGCCGAGGAG---CUGgUGGACGa -3'
miRNA:   3'- gUUCCGGUUCCUUcagGACgACCUGC- -5'
7215 3' -55 NC_001900.1 + 4459 0.75 0.208748
Target:  5'- aCGAGGCCAAGGAcauGUUCcGCUGGcACu -3'
miRNA:   3'- -GUUCCGGUUCCUu--CAGGaCGACC-UGc -5'
7215 3' -55 NC_001900.1 + 16674 1.09 0.000886
Target:  5'- aCAAGGCCAAGGAAGUCCUGCUGGACGu -3'
miRNA:   3'- -GUUCCGGUUCCUUCAGGACGACCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.