Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7215 | 3' | -55 | NC_001900.1 | + | 20883 | 0.66 | 0.669704 |
Target: 5'- aCAAGGCCAGcucgccGAGG-CgCUGCUGGAg- -3' miRNA: 3'- -GUUCCGGUUc-----CUUCaG-GACGACCUgc -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 16530 | 0.67 | 0.613724 |
Target: 5'- uCGAGGCCAGccGGucGGUCCUGaccgaaCUGGAgCGu -3' miRNA: 3'- -GUUCCGGUU--CCu-UCAGGAC------GACCU-GC- -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 26989 | 0.67 | 0.613724 |
Target: 5'- --uGGCCucGGAAGgCCgGCUGGAa- -3' miRNA: 3'- guuCCGGuuCCUUCaGGaCGACCUgc -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 25949 | 0.68 | 0.580251 |
Target: 5'- uCAGGGCCGAccaGAAGUgguuccacgUCUGCUGGAg- -3' miRNA: 3'- -GUUCCGGUUc--CUUCA---------GGACGACCUgc -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 19691 | 0.68 | 0.53628 |
Target: 5'- --uGGCCGAGGAgaugGGUCCggUGCUGaucGGCa -3' miRNA: 3'- guuCCGGUUCCU----UCAGG--ACGAC---CUGc -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 8915 | 0.7 | 0.432552 |
Target: 5'- aCAGaGUCGcGGcagcGGUCCUGCUGGACGc -3' miRNA: 3'- -GUUcCGGUuCCu---UCAGGACGACCUGC- -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 10489 | 0.73 | 0.29387 |
Target: 5'- aGAGGCCGcgauGGGccucGG-CCUGCUGGGCa -3' miRNA: 3'- gUUCCGGUu---CCU----UCaGGACGACCUGc -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 27533 | 0.74 | 0.272074 |
Target: 5'- ---cGCCGAGGAAGUCggcgguCUGUUGGAUGg -3' miRNA: 3'- guucCGGUUCCUUCAG------GACGACCUGC- -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 15883 | 0.74 | 0.245057 |
Target: 5'- gGAGGCCGAGGAG---CUGgUGGACGa -3' miRNA: 3'- gUUCCGGUUCCUUcagGACgACCUGC- -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 4459 | 0.75 | 0.208748 |
Target: 5'- aCGAGGCCAAGGAcauGUUCcGCUGGcACu -3' miRNA: 3'- -GUUCCGGUUCCUu--CAGGaCGACC-UGc -5' |
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7215 | 3' | -55 | NC_001900.1 | + | 16674 | 1.09 | 0.000886 |
Target: 5'- aCAAGGCCAAGGAAGUCCUGCUGGACGu -3' miRNA: 3'- -GUUCCGGUUCCUUCAGGACGACCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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