Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 6113 | 0.66 | 0.529072 |
Target: 5'- cUgGCCCAGaucGAGGCagccaacccCGAGUACCUa -3' miRNA: 3'- aAgCGGGUC---CUCCGcau------GCUCAUGGA- -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 8186 | 0.67 | 0.45697 |
Target: 5'- gUCGCCgAGaAGGCGUAcguCGAGUGgCa -3' miRNA: 3'- aAGCGGgUCcUCCGCAU---GCUCAUgGa -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 12221 | 0.75 | 0.13875 |
Target: 5'- gUUCGCCCAGaAGGUGccgAUGGGUACCa -3' miRNA: 3'- -AAGCGGGUCcUCCGCa--UGCUCAUGGa -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 12568 | 0.68 | 0.381508 |
Target: 5'- aUCGUCCAGGAGcUGUGgGucuGGUACCUc -3' miRNA: 3'- aAGCGGGUCCUCcGCAUgC---UCAUGGA- -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 13101 | 0.68 | 0.39048 |
Target: 5'- gUCGagcacCCCGGGcuGCGcgACGAGUACCUc -3' miRNA: 3'- aAGC-----GGGUCCucCGCa-UGCUCAUGGA- -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 14131 | 0.66 | 0.487271 |
Target: 5'- gUCGCCCacaAGGAGcGCGUcuACGAcGUGuCCc -3' miRNA: 3'- aAGCGGG---UCCUC-CGCA--UGCU-CAU-GGa -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 16708 | 1.05 | 0.00089 |
Target: 5'- gUUCGCCCAGGAGGCGUACGAGUACCUc -3' miRNA: 3'- -AAGCGGGUCCUCCGCAUGCUCAUGGA- -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 17511 | 0.66 | 0.497582 |
Target: 5'- ---aUCCGGGAGGCGUACcgGGGUGgCa -3' miRNA: 3'- aagcGGGUCCUCCGCAUG--CUCAUgGa -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 23186 | 0.69 | 0.338757 |
Target: 5'- gUgGCCgGGGAGGUGUuCGAGcacUACCg -3' miRNA: 3'- aAgCGGgUCCUCCGCAuGCUC---AUGGa -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 27649 | 0.66 | 0.507989 |
Target: 5'- gUCGCCCAGGccGGUG-ACGAuGU-CCUc -3' miRNA: 3'- aAGCGGGUCCu-CCGCaUGCU-CAuGGA- -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 44039 | 0.66 | 0.507989 |
Target: 5'- -gCGUgCAaGcGGUGUGCGAGUACCg -3' miRNA: 3'- aaGCGgGUcCuCCGCAUGCUCAUGGa -5' |
|||||||
7215 | 5' | -57.9 | NC_001900.1 | + | 45124 | 0.71 | 0.264024 |
Target: 5'- gUUCGCCguGGAGGCG----GGUACCg -3' miRNA: 3'- -AAGCGGguCCUCCGCaugcUCAUGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home