miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7218 3' -55.8 NC_001900.1 + 7862 0.66 0.678178
Target:  5'- -cACCAGcAgGUGCUGGGCgcgcUGAUcaaGACGc -3'
miRNA:   3'- gaUGGUC-UgCACGACCCG----GCUG---UUGC- -5'
7218 3' -55.8 NC_001900.1 + 13986 0.66 0.667211
Target:  5'- -cGgCAcGACGUGCUGaGCagGACAACGg -3'
miRNA:   3'- gaUgGU-CUGCACGACcCGg-CUGUUGC- -5'
7218 3' -55.8 NC_001900.1 + 25707 0.66 0.667211
Target:  5'- -gACCuGACG-GUcuUGGuguuGCCGACGACGa -3'
miRNA:   3'- gaUGGuCUGCaCG--ACC----CGGCUGUUGC- -5'
7218 3' -55.8 NC_001900.1 + 2430 0.66 0.656212
Target:  5'- gCUGCCGGGUG-GCUGugugaGGUCGACGGCc -3'
miRNA:   3'- -GAUGGUCUGCaCGAC-----CCGGCUGUUGc -5'
7218 3' -55.8 NC_001900.1 + 46614 0.66 0.634157
Target:  5'- --cCCGGACGcaGCcgGGGCCGuCGACc -3'
miRNA:   3'- gauGGUCUGCa-CGa-CCCGGCuGUUGc -5'
7218 3' -55.8 NC_001900.1 + 708 0.67 0.601084
Target:  5'- -gGCgGGACaUGCcacGGGCCG-CAGCGg -3'
miRNA:   3'- gaUGgUCUGcACGa--CCCGGCuGUUGC- -5'
7218 3' -55.8 NC_001900.1 + 20129 0.67 0.590101
Target:  5'- -cACCGGACGUagaGCUGcGC-GACGGCGa -3'
miRNA:   3'- gaUGGUCUGCA---CGACcCGgCUGUUGC- -5'
7218 3' -55.8 NC_001900.1 + 8046 0.67 0.590101
Target:  5'- --cCCAGugGUGgggccagGGGCCuGACGGCa -3'
miRNA:   3'- gauGGUCugCACga-----CCCGG-CUGUUGc -5'
7218 3' -55.8 NC_001900.1 + 8934 0.67 0.579153
Target:  5'- cCUGCUGGACGcgGCUGcuGGCCaggaacaccacGACAACa -3'
miRNA:   3'- -GAUGGUCUGCa-CGAC--CCGG-----------CUGUUGc -5'
7218 3' -55.8 NC_001900.1 + 20117 0.68 0.535883
Target:  5'- gUACCuGGGuCGgcGCUGauGGCCGACGACGu -3'
miRNA:   3'- gAUGG-UCU-GCa-CGAC--CCGGCUGUUGC- -5'
7218 3' -55.8 NC_001900.1 + 43304 0.68 0.531613
Target:  5'- -aACCAGACGUugcucacGCUggcucccucacgucGGGCCGACcgUGg -3'
miRNA:   3'- gaUGGUCUGCA-------CGA--------------CCCGGCUGuuGC- -5'
7218 3' -55.8 NC_001900.1 + 5297 0.68 0.524172
Target:  5'- gCUGCCGGcCGUGCgUGacggccucauccaGGCCGACuGCa -3'
miRNA:   3'- -GAUGGUCuGCACG-AC-------------CCGGCUGuUGc -5'
7218 3' -55.8 NC_001900.1 + 12137 0.68 0.514665
Target:  5'- -cACCAGAagGUGCUGuggucgauggaGGUCGGCAACc -3'
miRNA:   3'- gaUGGUCUg-CACGAC-----------CCGGCUGUUGc -5'
7218 3' -55.8 NC_001900.1 + 3533 0.69 0.493797
Target:  5'- -cGCCAucGACGcgGCgcucgGGGCCGGUAACGg -3'
miRNA:   3'- gaUGGU--CUGCa-CGa----CCCGGCUGUUGC- -5'
7218 3' -55.8 NC_001900.1 + 12252 0.69 0.463248
Target:  5'- -gGCCAGAagauccCGcaCUGGGUCGGCGACGu -3'
miRNA:   3'- gaUGGUCU------GCacGACCCGGCUGUUGC- -5'
7218 3' -55.8 NC_001900.1 + 1229 0.7 0.43372
Target:  5'- -cACCGGugGUGUacucggUGGcGgCGGCAGCGg -3'
miRNA:   3'- gaUGGUCugCACG------ACC-CgGCUGUUGC- -5'
7218 3' -55.8 NC_001900.1 + 23309 0.7 0.43372
Target:  5'- -cACCAcGGCGgucggccccgGCUGGGCCGAguucuauacCGGCGg -3'
miRNA:   3'- gaUGGU-CUGCa---------CGACCCGGCU---------GUUGC- -5'
7218 3' -55.8 NC_001900.1 + 24832 0.72 0.335572
Target:  5'- gCUGCCGGugGUGCUGGa--GGCAAUu -3'
miRNA:   3'- -GAUGGUCugCACGACCcggCUGUUGc -5'
7218 3' -55.8 NC_001900.1 + 43852 0.75 0.217687
Target:  5'- -gGCCAGcGCGaggGCUGGGCCGACugguGCc -3'
miRNA:   3'- gaUGGUC-UGCa--CGACCCGGCUGu---UGc -5'
7218 3' -55.8 NC_001900.1 + 22993 0.78 0.133303
Target:  5'- cCUuguCCGGGCGUGgUGGGCCGGgAugGg -3'
miRNA:   3'- -GAu--GGUCUGCACgACCCGGCUgUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.