miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7220 3' -55.5 NC_001900.1 + 18926 0.66 0.681646
Target:  5'- uUCCAgAUCGgcUCUGuCGAUGAGGcGCUg -3'
miRNA:   3'- cAGGUgUAGC--AGAC-GCUGCUCC-UGGu -5'
7220 3' -55.5 NC_001900.1 + 40336 0.66 0.670661
Target:  5'- -gCCGCGUCGagUGCGAUGAcucGGAaCCc -3'
miRNA:   3'- caGGUGUAGCagACGCUGCU---CCU-GGu -5'
7220 3' -55.5 NC_001900.1 + 33641 0.66 0.65964
Target:  5'- -aUCGCGUCGUC-GCGACGGacACCGg -3'
miRNA:   3'- caGGUGUAGCAGaCGCUGCUccUGGU- -5'
7220 3' -55.5 NC_001900.1 + 11672 0.66 0.648593
Target:  5'- cGUCCACAUCG---GCGACcuGAuGGACUAc -3'
miRNA:   3'- -CAGGUGUAGCagaCGCUG--CU-CCUGGU- -5'
7220 3' -55.5 NC_001900.1 + 6886 0.66 0.648593
Target:  5'- cGUCCGCAccgaGUCggGgGACGGGGAUg- -3'
miRNA:   3'- -CAGGUGUag--CAGa-CgCUGCUCCUGgu -5'
7220 3' -55.5 NC_001900.1 + 13368 0.67 0.593331
Target:  5'- -aCCAagguCAUCGUCcagcGCGACGA-GACCAa -3'
miRNA:   3'- caGGU----GUAGCAGa---CGCUGCUcCUGGU- -5'
7220 3' -55.5 NC_001900.1 + 18043 0.67 0.582341
Target:  5'- gGUCCAgAUCGUCaucaaccuggcUGCGGcCGuGGugCAg -3'
miRNA:   3'- -CAGGUgUAGCAG-----------ACGCU-GCuCCugGU- -5'
7220 3' -55.5 NC_001900.1 + 13007 0.68 0.571392
Target:  5'- -aCCaACGUgGUCagcggcgGCGGCGAGGGCUg -3'
miRNA:   3'- caGG-UGUAgCAGa------CGCUGCUCCUGGu -5'
7220 3' -55.5 NC_001900.1 + 4987 0.68 0.534591
Target:  5'- -cCgGCAugcUCGUCgggcuccagcacgGCGGCGGGGGCCGg -3'
miRNA:   3'- caGgUGU---AGCAGa------------CGCUGCUCCUGGU- -5'
7220 3' -55.5 NC_001900.1 + 9036 0.69 0.517558
Target:  5'- -aCCgACAUCGUCgGCGACGGcuacGaGGCCAu -3'
miRNA:   3'- caGG-UGUAGCAGaCGCUGCU----C-CUGGU- -5'
7220 3' -55.5 NC_001900.1 + 22053 0.72 0.329242
Target:  5'- gGUCgC-CAUCGUC-GCGACGAGGAUg- -3'
miRNA:   3'- -CAG-GuGUAGCAGaCGCUGCUCCUGgu -5'
7220 3' -55.5 NC_001900.1 + 13960 0.98 0.005233
Target:  5'- aGUCCACAUCGUC-GCGACGAGGACCAc -3'
miRNA:   3'- -CAGGUGUAGCAGaCGCUGCUCCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.