miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7224 3' -53 NC_001900.1 + 23407 0.66 0.809336
Target:  5'- uCAcGUCgCGg-CGAUGAuCCGCGAGCAc -3'
miRNA:   3'- -GUcUAGgGCaaGCUACU-GGCGUUCGU- -5'
7224 3' -53 NC_001900.1 + 7483 0.66 0.809336
Target:  5'- cCAGAagCUGgaCG-UGACCuGCAAGCAg -3'
miRNA:   3'- -GUCUagGGCaaGCuACUGG-CGUUCGU- -5'
7224 3' -53 NC_001900.1 + 47705 0.66 0.809336
Target:  5'- -uGGUCgCGggCGgcGACCGCcAGCGc -3'
miRNA:   3'- guCUAGgGCaaGCuaCUGGCGuUCGU- -5'
7224 3' -53 NC_001900.1 + 47448 0.66 0.809336
Target:  5'- cUAGAaCCC-UUCGGUGGCUGuCAAGUc -3'
miRNA:   3'- -GUCUaGGGcAAGCUACUGGC-GUUCGu -5'
7224 3' -53 NC_001900.1 + 20795 0.66 0.799534
Target:  5'- ----aCCCGUUCGAUGACCugaaGGGUc -3'
miRNA:   3'- gucuaGGGCAAGCUACUGGcg--UUCGu -5'
7224 3' -53 NC_001900.1 + 4100 0.66 0.789547
Target:  5'- aAGAUCCCGaacCGcUG-CCGCuGGCAg -3'
miRNA:   3'- gUCUAGGGCaa-GCuACuGGCGuUCGU- -5'
7224 3' -53 NC_001900.1 + 31698 0.66 0.789547
Target:  5'- gCAGAUCggCGUUCuccGACCGCAGGUu -3'
miRNA:   3'- -GUCUAGg-GCAAGcuaCUGGCGUUCGu -5'
7224 3' -53 NC_001900.1 + 9843 0.66 0.789547
Target:  5'- gAGAUcacCCCGgagcuucggUCGAUGACCGacgcGGCGg -3'
miRNA:   3'- gUCUA---GGGCa--------AGCUACUGGCgu--UCGU- -5'
7224 3' -53 NC_001900.1 + 14254 0.66 0.779388
Target:  5'- gAGAUCCUGagcCGGUGugCccgcgaagGCGAGCAg -3'
miRNA:   3'- gUCUAGGGCaa-GCUACugG--------CGUUCGU- -5'
7224 3' -53 NC_001900.1 + 35006 0.66 0.768027
Target:  5'- aGGAUCCCGUgcuccUUGGUGAaggagcgagggaaCCGCAuccGGUAg -3'
miRNA:   3'- gUCUAGGGCA-----AGCUACU-------------GGCGU---UCGU- -5'
7224 3' -53 NC_001900.1 + 12073 0.67 0.726423
Target:  5'- gAGAUUagca--GAUGGCCGCAGGCAc -3'
miRNA:   3'- gUCUAGggcaagCUACUGGCGUUCGU- -5'
7224 3' -53 NC_001900.1 + 10410 0.67 0.726423
Target:  5'- -cGAUCCCGUacaugCGGUGGUCGCccuGGCGu -3'
miRNA:   3'- guCUAGGGCAa----GCUACUGGCGu--UCGU- -5'
7224 3' -53 NC_001900.1 + 39271 0.68 0.705563
Target:  5'- cCGGGUCCgGUUCGGaagcgggaccaccggGACCGCGccgAGCc -3'
miRNA:   3'- -GUCUAGGgCAAGCUa--------------CUGGCGU---UCGu -5'
7224 3' -53 NC_001900.1 + 1432 0.69 0.648448
Target:  5'- uCGGAUa-CGUUCGAgGGCCGUggGAGCAg -3'
miRNA:   3'- -GUCUAggGCAAGCUaCUGGCG--UUCGU- -5'
7224 3' -53 NC_001900.1 + 44372 0.69 0.641672
Target:  5'- aGGAUCCCGUcgaguUCGAUuucgaaguacagcucGAUCGCuGGCGu -3'
miRNA:   3'- gUCUAGGGCA-----AGCUA---------------CUGGCGuUCGU- -5'
7224 3' -53 NC_001900.1 + 27566 0.69 0.625853
Target:  5'- uGGAUCUgGgcugCGAUGGCCGCGAacGCc -3'
miRNA:   3'- gUCUAGGgCaa--GCUACUGGCGUU--CGu -5'
7224 3' -53 NC_001900.1 + 19713 0.69 0.614559
Target:  5'- gAGAUCCCGUggGA-GACCGCuccguucacGCAg -3'
miRNA:   3'- gUCUAGGGCAagCUaCUGGCGuu-------CGU- -5'
7224 3' -53 NC_001900.1 + 18239 0.69 0.603281
Target:  5'- aAGAgCUgGUUCGAUGA-CGCAGGCu -3'
miRNA:   3'- gUCUaGGgCAAGCUACUgGCGUUCGu -5'
7224 3' -53 NC_001900.1 + 25468 0.7 0.580813
Target:  5'- aUAGAcCCCG-UCGGUgaugccGACCGUAGGCGc -3'
miRNA:   3'- -GUCUaGGGCaAGCUA------CUGGCGUUCGU- -5'
7224 3' -53 NC_001900.1 + 45900 0.71 0.525576
Target:  5'- uCGGGUCCgCucaagacUUCGAUGGCCGCGAGgAu -3'
miRNA:   3'- -GUCUAGG-Gc------AAGCUACUGGCGUUCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.