miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7225 5' -49.7 NC_001900.1 + 3074 0.66 0.956996
Target:  5'- aCCCGACcggcgggAAGGUCGuUGAcgUGAcCGAc -3'
miRNA:   3'- -GGGCUG-------UUCCAGCuACUcaACUaGCU- -5'
7225 5' -49.7 NC_001900.1 + 43329 0.66 0.952232
Target:  5'- aCCGGCGucggcggucaucgAGGUUGGUGAgcccgccGUUGAUCc- -3'
miRNA:   3'- gGGCUGU-------------UCCAGCUACU-------CAACUAGcu -5'
7225 5' -49.7 NC_001900.1 + 25144 0.66 0.943696
Target:  5'- aCCGcUggGGUCGuUGucGUUGAUCGu -3'
miRNA:   3'- gGGCuGuuCCAGCuACu-CAACUAGCu -5'
7225 5' -49.7 NC_001900.1 + 18226 0.66 0.943696
Target:  5'- cCCCGGCAAgaucaagagcuGGuUCGAUGAcgcaggcuccugGcUGAUCGAg -3'
miRNA:   3'- -GGGCUGUU-----------CC-AGCUACU------------CaACUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 45758 0.67 0.927378
Target:  5'- -gUGACcGGGUCGAgguGGggGAUCGAc -3'
miRNA:   3'- ggGCUGuUCCAGCUac-UCaaCUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 34475 0.67 0.927378
Target:  5'- cCCCGGCGA-GUCGA-GGGUcuucucggagGAUCGGa -3'
miRNA:   3'- -GGGCUGUUcCAGCUaCUCAa---------CUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 11660 0.67 0.926196
Target:  5'- gCCCGACGAGGUCGuccacaucggcGAccUGAUgGAc -3'
miRNA:   3'- -GGGCUGUUCCAGCua---------CUcaACUAgCU- -5'
7225 5' -49.7 NC_001900.1 + 28248 0.67 0.917594
Target:  5'- uUCGACGGGGUCGAUGccccacagacccuucAGgucAUCGAa -3'
miRNA:   3'- gGGCUGUUCCAGCUAC---------------UCaacUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 46137 0.67 0.914382
Target:  5'- gCCGAgcuGGUCGAUGAccaggccGUUGcgCGAa -3'
miRNA:   3'- gGGCUguuCCAGCUACU-------CAACuaGCU- -5'
7225 5' -49.7 NC_001900.1 + 9492 0.68 0.908416
Target:  5'- aCCCGAaGGGGagCGAUGGGgaGAgccgCGAa -3'
miRNA:   3'- -GGGCUgUUCCa-GCUACUCaaCUa---GCU- -5'
7225 5' -49.7 NC_001900.1 + 23607 0.69 0.871079
Target:  5'- aCCGACGGGGUCuAUGucgaGGUCGGu -3'
miRNA:   3'- gGGCUGUUCCAGcUACucaaCUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 42796 0.69 0.862794
Target:  5'- gCCCGACGuGGaUCugccGUGGGUUGGUCa- -3'
miRNA:   3'- -GGGCUGUuCC-AGc---UACUCAACUAGcu -5'
7225 5' -49.7 NC_001900.1 + 5442 0.69 0.8577
Target:  5'- aCCGACcucggcaacaccccgGAGGUCGAcgGAGacGGUCGGc -3'
miRNA:   3'- gGGCUG---------------UUCCAGCUa-CUCaaCUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 2754 0.7 0.827182
Target:  5'- -aCGACGAGGUCGGUGAcc---UCGAa -3'
miRNA:   3'- ggGCUGUUCCAGCUACUcaacuAGCU- -5'
7225 5' -49.7 NC_001900.1 + 12262 0.7 0.817708
Target:  5'- uCCCGcACuGGGUCGGcgacgUGAGUgcccagugGAUCGGu -3'
miRNA:   3'- -GGGC-UGuUCCAGCU-----ACUCAa-------CUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 36296 0.71 0.735425
Target:  5'- uCCaCGACGuGGUCGcUGAGgaUGGUCGGa -3'
miRNA:   3'- -GG-GCUGUuCCAGCuACUCa-ACUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 21263 0.72 0.724511
Target:  5'- gCUCGGCGcGGUCGGUGGcgcGAUCGAc -3'
miRNA:   3'- -GGGCUGUuCCAGCUACUcaaCUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 23229 0.72 0.69011
Target:  5'- uCCUGGCGuGGaccagccugcgguUCGGUGAGcUGAUCGAg -3'
miRNA:   3'- -GGGCUGUuCC-------------AGCUACUCaACUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 14037 0.78 0.399858
Target:  5'- cUCUGACuGGGUCGAUGcGUucgUGAUCGAg -3'
miRNA:   3'- -GGGCUGuUCCAGCUACuCA---ACUAGCU- -5'
7225 5' -49.7 NC_001900.1 + 11063 1.12 0.002519
Target:  5'- aCCCGACAAGGUCGAUGAGUUGAUCGAc -3'
miRNA:   3'- -GGGCUGUUCCAGCUACUCAACUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.