miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7226 5' -59.8 NC_001900.1 + 43369 0.66 0.473395
Target:  5'- uCGAUCUGGuCGacCGCGAUGaaGAGGUCAu -3'
miRNA:   3'- -GCUGGACU-GC--GCGUUGCggCUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 26810 0.66 0.453876
Target:  5'- aCGACCUcGGCcauCGCuGgGCCGGGGCg- -3'
miRNA:   3'- -GCUGGA-CUGc--GCGuUgCGGCUCCGgu -5'
7226 5' -59.8 NC_001900.1 + 4064 0.66 0.453876
Target:  5'- cCGACCagguUGACGUGCu-CGCaCGuGGCUu -3'
miRNA:   3'- -GCUGG----ACUGCGCGuuGCG-GCuCCGGu -5'
7226 5' -59.8 NC_001900.1 + 9590 0.66 0.444281
Target:  5'- gGAgccCCcGACGCGCAuguACGCCGAGaUCGa -3'
miRNA:   3'- gCU---GGaCUGCGCGU---UGCGGCUCcGGU- -5'
7226 5' -59.8 NC_001900.1 + 17029 0.66 0.444281
Target:  5'- aGACCaUGAUGC-CcGCGCUGGaagcGGCCAa -3'
miRNA:   3'- gCUGG-ACUGCGcGuUGCGGCU----CCGGU- -5'
7226 5' -59.8 NC_001900.1 + 9028 0.67 0.416199
Target:  5'- aGGCCgUGACcgacaucgucgGCGaCGGCuaCGAGGCCAu -3'
miRNA:   3'- gCUGG-ACUG-----------CGC-GUUGcgGCUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 15280 0.67 0.415282
Target:  5'- aGGCCgUGGC-CGCAcgguucggccgagACGCCGAGGaCAu -3'
miRNA:   3'- gCUGG-ACUGcGCGU-------------UGCGGCUCCgGU- -5'
7226 5' -59.8 NC_001900.1 + 18135 0.67 0.407082
Target:  5'- gCGuCCUGGCagacugcgucgGCGCAGuCGCCGAgugGGUCGg -3'
miRNA:   3'- -GCuGGACUG-----------CGCGUU-GCGGCU---CCGGU- -5'
7226 5' -59.8 NC_001900.1 + 28192 0.67 0.407082
Target:  5'- gCGAgCUGGCcuuGUGCGAUGUCGuuGGCCu -3'
miRNA:   3'- -GCUgGACUG---CGCGUUGCGGCu-CCGGu -5'
7226 5' -59.8 NC_001900.1 + 43619 0.67 0.398092
Target:  5'- uCGACCUccGGgGUGU--UGCCGAGGUCGg -3'
miRNA:   3'- -GCUGGA--CUgCGCGuuGCGGCUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 22246 0.67 0.398092
Target:  5'- aCGACCgccccGGCccaGCG-AugGCCGAGGUCGu -3'
miRNA:   3'- -GCUGGa----CUG---CGCgUugCGGCUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 44252 0.67 0.38923
Target:  5'- gCGACCgcgaGCGCGUAcACGCCGAG-CUg -3'
miRNA:   3'- -GCUGGac--UGCGCGU-UGCGGCUCcGGu -5'
7226 5' -59.8 NC_001900.1 + 23130 0.67 0.380498
Target:  5'- uCGGcCCUGACcggGCGCAGCccgGgCGAGGaCCAg -3'
miRNA:   3'- -GCU-GGACUG---CGCGUUG---CgGCUCC-GGU- -5'
7226 5' -59.8 NC_001900.1 + 38559 0.67 0.371898
Target:  5'- uCGACCau-CGUGCccAGCagGCCGAGGCCc -3'
miRNA:   3'- -GCUGGacuGCGCG--UUG--CGGCUCCGGu -5'
7226 5' -59.8 NC_001900.1 + 35120 0.68 0.363431
Target:  5'- gCGACCUGgaaGCGUGCGAuCGCuuggauCGGGGUCu -3'
miRNA:   3'- -GCUGGAC---UGCGCGUU-GCG------GCUCCGGu -5'
7226 5' -59.8 NC_001900.1 + 23295 0.68 0.363431
Target:  5'- aCGGCgaGACGaugaagcucCGCGuGCGCCGGGGCgCGg -3'
miRNA:   3'- -GCUGgaCUGC---------GCGU-UGCGGCUCCG-GU- -5'
7226 5' -59.8 NC_001900.1 + 9936 0.68 0.355926
Target:  5'- cCGGCCguccaggucaucgggGA-GCGCAuaGCGCCGAucgaGGCCAc -3'
miRNA:   3'- -GCUGGa--------------CUgCGCGU--UGCGGCU----CCGGU- -5'
7226 5' -59.8 NC_001900.1 + 28909 0.68 0.355099
Target:  5'- gCGACgaGGcCGCGCAGacggaaguCGCCGucGCCAg -3'
miRNA:   3'- -GCUGgaCU-GCGCGUU--------GCGGCucCGGU- -5'
7226 5' -59.8 NC_001900.1 + 38097 0.68 0.34528
Target:  5'- gCGACCUGccaucuccacuuCGCGCAcuguCGCCaAGGUCAg -3'
miRNA:   3'- -GCUGGACu-----------GCGCGUu---GCGGcUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 20814 0.68 0.338842
Target:  5'- gGACCUGAuccgucgacUGCaCGACGCuaccgaCGAGGCCGu -3'
miRNA:   3'- gCUGGACU---------GCGcGUUGCG------GCUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.