miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7226 5' -59.8 NC_001900.1 + 10955 1.01 0.001429
Target:  5'- uCGACCUGACGCGCAACGCCGAGGCa- -3'
miRNA:   3'- -GCUGGACUGCGCGUUGCGGCUCCGgu -5'
7226 5' -59.8 NC_001900.1 + 2631 0.76 0.091557
Target:  5'- gCGGCCaUGAgGCGCAGagguaCCGAGGCCAg -3'
miRNA:   3'- -GCUGG-ACUgCGCGUUgc---GGCUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 8063 0.74 0.134583
Target:  5'- gGGCCUGACG-GCAAgGCCaacgaAGGCCAc -3'
miRNA:   3'- gCUGGACUGCgCGUUgCGGc----UCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 30393 0.71 0.222603
Target:  5'- uCGAgCUG-CGCcuGCAGCGCCGcacGGCCGg -3'
miRNA:   3'- -GCUgGACuGCG--CGUUGCGGCu--CCGGU- -5'
7226 5' -59.8 NC_001900.1 + 10609 0.71 0.222603
Target:  5'- -cGCCUGACGCcugagcaguauGCAGCgGCCcAGGCCGu -3'
miRNA:   3'- gcUGGACUGCG-----------CGUUG-CGGcUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 16498 0.71 0.227801
Target:  5'- gGugCUGGagcauuccaGCGCGACGUucuacauCGAGGCCAg -3'
miRNA:   3'- gCugGACUg--------CGCGUUGCG-------GCUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 3514 0.71 0.232507
Target:  5'- uGGCCggugacauccagGACGCcaucgacGCGGCGCuCGGGGCCGg -3'
miRNA:   3'- gCUGGa-----------CUGCG-------CGUUGCG-GCUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 18663 0.71 0.234293
Target:  5'- aGGCCgGcCGUGCGGCGCUGcAGGCgCAg -3'
miRNA:   3'- gCUGGaCuGCGCGUUGCGGC-UCCG-GU- -5'
7226 5' -59.8 NC_001900.1 + 16637 0.7 0.246494
Target:  5'- cCGACCUGAa-CGCGGCccagGCCaAGGCCGa -3'
miRNA:   3'- -GCUGGACUgcGCGUUG----CGGcUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 7991 0.7 0.248996
Target:  5'- cCGGCCUGGCcCGCAacgucucggaggagaACGUCGAccgacuGGCCAa -3'
miRNA:   3'- -GCUGGACUGcGCGU---------------UGCGGCU------CCGGU- -5'
7226 5' -59.8 NC_001900.1 + 39757 0.7 0.265777
Target:  5'- uGACUgcaucugGACGgGCAccgugACGCCGAuGGCCu -3'
miRNA:   3'- gCUGGa------CUGCgCGU-----UGCGGCU-CCGGu -5'
7226 5' -59.8 NC_001900.1 + 20043 0.69 0.286263
Target:  5'- uGGCCUGACGaGCGuUGCCcAGGCUg -3'
miRNA:   3'- gCUGGACUGCgCGUuGCGGcUCCGGu -5'
7226 5' -59.8 NC_001900.1 + 16651 0.69 0.307973
Target:  5'- gGAgCUGuCGgGCuccGACGCCGAcaaGGCCAa -3'
miRNA:   3'- gCUgGACuGCgCG---UUGCGGCU---CCGGU- -5'
7226 5' -59.8 NC_001900.1 + 13277 0.68 0.323133
Target:  5'- gCGACCgcUGACGaCGUuguGACGuuGuGGGCCAa -3'
miRNA:   3'- -GCUGG--ACUGC-GCG---UUGCggC-UCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 4371 0.68 0.328569
Target:  5'- gCGGCCUGGCugccgcaggggaccGCGUuccacgcuguCGCCGAGGCg- -3'
miRNA:   3'- -GCUGGACUG--------------CGCGuu--------GCGGCUCCGgu -5'
7226 5' -59.8 NC_001900.1 + 20814 0.68 0.338842
Target:  5'- gGACCUGAuccgucgacUGCaCGACGCuaccgaCGAGGCCGu -3'
miRNA:   3'- gCUGGACU---------GCGcGUUGCG------GCUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 12958 0.68 0.338842
Target:  5'- aGGCUgaguACGCGUucacugcaacGACGCCGAGGCg- -3'
miRNA:   3'- gCUGGac--UGCGCG----------UUGCGGCUCCGgu -5'
7226 5' -59.8 NC_001900.1 + 38097 0.68 0.34528
Target:  5'- gCGACCUGccaucuccacuuCGCGCAcuguCGCCaAGGUCAg -3'
miRNA:   3'- -GCUGGACu-----------GCGCGUu---GCGGcUCCGGU- -5'
7226 5' -59.8 NC_001900.1 + 28909 0.68 0.355099
Target:  5'- gCGACgaGGcCGCGCAGacggaaguCGCCGucGCCAg -3'
miRNA:   3'- -GCUGgaCU-GCGCGUU--------GCGGCucCGGU- -5'
7226 5' -59.8 NC_001900.1 + 9936 0.68 0.355926
Target:  5'- cCGGCCguccaggucaucgggGA-GCGCAuaGCGCCGAucgaGGCCAc -3'
miRNA:   3'- -GCUGGa--------------CUgCGCGU--UGCGGCU----CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.