miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7227 3' -51 NC_001900.1 + 44519 0.66 0.887872
Target:  5'- cGCuGGCCGuuGUACGgaccUGACCAcGUCc -3'
miRNA:   3'- -CGuUCGGCuuCAUGU----ACUGGUaCGGc -5'
7227 3' -51 NC_001900.1 + 46136 0.66 0.887872
Target:  5'- ---cGCCGAgcuGGUcgAUGACCAgGCCGu -3'
miRNA:   3'- cguuCGGCU---UCAugUACUGGUaCGGC- -5'
7227 3' -51 NC_001900.1 + 16795 0.66 0.88009
Target:  5'- cGUucuGCCGA---ACAUGACCAacucGCCGa -3'
miRNA:   3'- -CGuu-CGGCUucaUGUACUGGUa---CGGC- -5'
7227 3' -51 NC_001900.1 + 48259 0.66 0.88009
Target:  5'- aGCGGGCCGuuuuGGUAUcgGcAUCgAUGCCc -3'
miRNA:   3'- -CGUUCGGCu---UCAUGuaC-UGG-UACGGc -5'
7227 3' -51 NC_001900.1 + 47380 0.66 0.872032
Target:  5'- --cAGCgCGGAGUagaccggcgggACGUGGCCcuUGCCGa -3'
miRNA:   3'- cguUCG-GCUUCA-----------UGUACUGGu-ACGGC- -5'
7227 3' -51 NC_001900.1 + 26017 0.66 0.872032
Target:  5'- ---cGcCCGGAGUacguuguagGCGUGccGCCGUGCCGu -3'
miRNA:   3'- cguuC-GGCUUCA---------UGUAC--UGGUACGGC- -5'
7227 3' -51 NC_001900.1 + 46786 0.66 0.872032
Target:  5'- cGCAGGCCGAucccuugGCGUuGAUCAgGUCGa -3'
miRNA:   3'- -CGUUCGGCUuca----UGUA-CUGGUaCGGC- -5'
7227 3' -51 NC_001900.1 + 37527 0.66 0.872032
Target:  5'- cGCcGGCCGGAGUGCcuucgguaGUuGCgGUGUCGg -3'
miRNA:   3'- -CGuUCGGCUUCAUG--------UAcUGgUACGGC- -5'
7227 3' -51 NC_001900.1 + 42428 0.67 0.855114
Target:  5'- cCAGGcCCGAGGggaucggGC-UGGCCcGUGCCGu -3'
miRNA:   3'- cGUUC-GGCUUCa------UGuACUGG-UACGGC- -5'
7227 3' -51 NC_001900.1 + 7674 0.67 0.855114
Target:  5'- cGCAGGgCGucaccGUACGUGACCuagGCUc -3'
miRNA:   3'- -CGUUCgGCuu---CAUGUACUGGua-CGGc -5'
7227 3' -51 NC_001900.1 + 31205 0.67 0.855114
Target:  5'- -uGGGCCGAcg-ACcuccuucuUGGCCGUGCCGu -3'
miRNA:   3'- cgUUCGGCUucaUGu-------ACUGGUACGGC- -5'
7227 3' -51 NC_001900.1 + 2521 0.67 0.846272
Target:  5'- aCGAGCUGggGaGC-UGAUCAUGgCCa -3'
miRNA:   3'- cGUUCGGCuuCaUGuACUGGUAC-GGc -5'
7227 3' -51 NC_001900.1 + 16011 0.67 0.846272
Target:  5'- cCGGGCCGAGcuGUACGcGACCGuacUGCgGa -3'
miRNA:   3'- cGUUCGGCUU--CAUGUaCUGGU---ACGgC- -5'
7227 3' -51 NC_001900.1 + 28540 0.67 0.840849
Target:  5'- aGCAGGUucaCGAAcaGCGUGACCAgcaagcaccacuugGCCGg -3'
miRNA:   3'- -CGUUCG---GCUUcaUGUACUGGUa-------------CGGC- -5'
7227 3' -51 NC_001900.1 + 31453 0.67 0.840849
Target:  5'- aGCGAGCUG-AGUGCccagagucccgagGACguUGCCGa -3'
miRNA:   3'- -CGUUCGGCuUCAUGua-----------CUGguACGGC- -5'
7227 3' -51 NC_001900.1 + 18192 0.67 0.837186
Target:  5'- gGCGGGagGAGGUGCAUGAggcgcucgaCGUGCUGa -3'
miRNA:   3'- -CGUUCggCUUCAUGUACUg--------GUACGGC- -5'
7227 3' -51 NC_001900.1 + 37735 0.67 0.837186
Target:  5'- cGCAA-CCGgcGUAaccGGCCAUGUCGg -3'
miRNA:   3'- -CGUUcGGCuuCAUguaCUGGUACGGC- -5'
7227 3' -51 NC_001900.1 + 41310 0.67 0.827866
Target:  5'- -aGGGuuGggGcACAUGACCGuuUGUCGu -3'
miRNA:   3'- cgUUCggCuuCaUGUACUGGU--ACGGC- -5'
7227 3' -51 NC_001900.1 + 6029 0.67 0.827866
Target:  5'- cGCGAGCUGGAGcgAguUGuCCGcGCCGc -3'
miRNA:   3'- -CGUUCGGCUUCa-UguACuGGUaCGGC- -5'
7227 3' -51 NC_001900.1 + 46874 0.68 0.818323
Target:  5'- uGguGGCCGAgaggcgGGUgaucACGUGGCCAUcucgGCCa -3'
miRNA:   3'- -CguUCGGCU------UCA----UGUACUGGUA----CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.